Os01g0633400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os01g0633400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.37 | 0.633 | 8.98 | 1.68 | 1.96 | -1.19 | -0.695 | -1.41 | 0.644 | 2.58 | 67 | 2633 | -- | -- |
| 184.02 | 0.632 | 8.97 | 1.79 | 1.99 | -1.3 | -0.841 | -- | 0.644 | 2.56 | 67 | 2627 | -- | -- |
| 183 | 0.63 | 8.98 | 1.68 | 1.96 | -1.19 | -- | -1.57 | 0.645 | 2.62 | 67.05 | 2651 | -- | -- |
| 186.36 | 0.636 | 8.97 | 1.81 | 1.98 | -1.32 | -- | -- | 0.647 | 2.61 | 67.13 | 2651 | -- | -- |
| 279.06 | 0.778 | 8.92 | 1.91 | -- | -1.53 | -- | 0.434 | 0.877 | -- | 71 | 259 | -- | -- |
| 236.61 | 0.721 | 8.94 | 1.64 | 1.78 | -- | -1.01 | -- | 0.749 | 2.76 | -- | -- | -- | -- |
| 240.06 | 0.726 | 8.94 | 1.67 | 1.78 | -- | -- | -- | 0.754 | 2.82 | -- | -- | -- | -- |
| 278.62 | 0.777 | 8.92 | 1.92 | -- | -1.42 | -- | -- | 0.885 | -- | 72.01 | 232 | -- | -- |
| 201.07 | 0.66 | 8.94 | -- | 1.94 | -2.34 | -- | -- | 0.645 | 2.86 | 67 | 28591 | -- | -- |
| 423.86 | 0.962 | 8.93 | 1.74 | -- | -- | -- | -- | 0.8 | -- | -- | -- | -- | -- |
| 313.46 | 0.828 | 8.98 | -- | 1.81 | -- | -- | -- | 0.568 | 2.83 | -- | -- | -- | -- |
| 362.63 | 0.887 | 8.98 | -- | -- | -1.37 | -- | -- | 0.607 | -- | 72.24 | 169 | -- | -- |
| 504.16 | 1.05 | 8.98 | -- | -- | -- | -- | -- | 0.606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.13 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 6 | 172.95 | wind | 3.0 | 43200 | > th | dose dependent | sin | 9 | NA |
| 8 | 173.29 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 12 | 173.60 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 13 | 173.67 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 15 | 173.70 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 44 | 174.22 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 2 | 11 |
| 78 | 174.84 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 23 | 11 |
| 84 | 174.92 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 89 | 174.99 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 21 | 16 |
| 110 | 175.21 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 140 | 175.53 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 152 | 175.63 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 182 | 175.99 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 200 | 176.14 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 208 | 176.20 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 227 | 176.41 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 276 | 177.14 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 277 | 177.14 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 296 | 177.37 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 321 | 177.58 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 329 | 177.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 349 | 177.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 358 | 177.95 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 359 | 177.97 | wind | 9.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 368 | 178.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 369 | 178.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 370 | 178.07 | wind | 7.0 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 378 | 178.14 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 379 | 178.14 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 381 | 178.16 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 416 | 178.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 427 | 178.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 432 | 178.48 | wind | 5.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 441 | 178.51 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 486 | 178.78 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 503 | 178.87 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 508 | 178.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 521 | 178.96 | wind | 5.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 524 | 178.97 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 591 | 179.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 592 | 179.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 608 | 179.40 | wind | 5.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 609 | 179.40 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 617 | 179.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 618 | 179.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 622 | 179.46 | wind | 5.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 713 | 180.03 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 855 | 180.70 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 902 | 180.95 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 906 | 180.96 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 942 | 181.12 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 975 | 181.22 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 980 | 181.23 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |