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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0921500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0267) R2 : 0.243
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.58 (0.214) R2dE : 0.243 R2E : 0.243
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000517 (0.0563) R2dN8 : 1.62e-07 R2N8 : 3.46e-05
σ : 0.501
deviance : 115.6
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.18
memory length : 818
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.86 0.495 3.16 -0.0319 0.145 1.22 -0.195 -2.75 0.0267 6.09 18.94 826 -- --
113.52 0.496 3.2 -0.151 0.129 2.42 -0.253 -- -0.0214 6.77 17.22 812 -- --
110.95 0.491 3.16 -0.0351 0.143 1.22 -- -2.75 0.0271 6.02 18.93 820 -- --
113.72 0.497 3.2 -0.161 0.156 2.48 -- -- -0.0234 6.49 17.16 818 -- --
111.96 0.493 3.17 -0.0248 -- 1.22 -- -2.74 0.0324 -- 19.05 779 -- --
143.74 0.562 3.22 -0.454 0.159 -- -0.567 -- -0.117 9.13 -- -- -- --
144.76 0.563 3.22 -0.476 0.171 -- -- -- -0.118 8.13 -- -- -- --
114.97 0.499 3.2 -0.161 -- 2.48 -- -- -0.0209 -- 17.17 813 -- --
114.38 0.498 3.2 -- 0.154 2.57 -- -- -0.00406 6.4 17.19 820 -- --
146.36 0.565 3.22 -0.475 -- -- -- -- -0.116 -- -- -- -- --
150.74 0.574 3.21 -- 0.168 -- -- -- -0.0655 8.34 -- -- -- --
115.6 0.501 3.2 -- -- 2.58 -- -- -0.000517 -- 17.18 818 -- --
152.31 0.576 3.21 -- -- -- -- -- -0.0638 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.64 temperature 20 720 < th dose dependent sin 2 NA
2 107.90 temperature 20 720 < th dose dependent rect. 1 17
3 108.09 temperature 20 720 < th dose dependent rect. 3 14
12 108.28 temperature 15 720 > th dose independent rect. 23 16
17 108.46 temperature 10 30 > th dose dependent rect. 3 23
28 108.82 temperature 15 720 > th dose independent rect. 21 18
49 109.45 temperature 15 720 > th dose independent rect. 3 16
60 109.79 temperature 15 720 > th dose independent rect. 3 12
93 110.61 temperature 15 1440 > th dose independent rect. 3 1
104 110.88 temperature 15 720 > th dose independent rect. 18 16
105 110.89 atmosphere 1015 4320 > th dose independent rect. 18 1
108 110.89 atmosphere 1015 4320 > th dose dependent rect. 18 1
117 110.99 atmosphere 1015 4320 > th dose dependent rect. 15 5
126 111.07 atmosphere 1015 4320 > th dose independent rect. 15 5
128 111.08 temperature 15 720 < th dose independent rect. 24 20
132 111.13 temperature 15 720 < th dose independent rect. 1 18
133 111.14 temperature 15 720 < th dose independent sin 2 NA
141 111.21 humidity 70 43200 > th dose independent rect. 3 1
148 111.25 temperature 15 720 < th dose independent rect. 21 8
149 111.25 temperature 15 720 < th dose independent rect. 20 14
150 111.25 temperature 15 720 < th dose independent rect. 22 20
161 111.27 temperature 15 720 < th dose independent sin 10 NA
164 111.28 temperature 15 720 < th dose independent rect. 20 11
174 111.32 temperature 15 720 > th dose independent sin 10 NA
175 111.32 temperature 15 4320 > th dose independent rect. 20 2
188 111.37 temperature 15 90 > th dose independent rect. 3 23
197 111.40 humidity 50 43200 < th dose dependent rect. 19 1
210 111.49 temperature 15 720 < th dose independent rect. 3 12
217 111.52 temperature 15 720 > th dose independent rect. 21 9
219 111.52 atmosphere 1010 1440 > th dose dependent rect. 1 2
220 111.53 temperature 15 720 < th dose independent rect. 22 6
224 111.53 temperature 15 720 < th dose dependent rect. 23 6
293 111.90 temperature 15 720 < th dose independent rect. 4 10
300 111.94 temperature 15 720 > th dose independent sin 2 NA
301 111.95 humidity 50 43200 < th dose independent rect. 19 1
310 112.00 temperature 20 720 < th dose dependent no NA NA
340 112.09 humidity 60 43200 < th dose independent rect. 23 1
343 112.09 humidity 60 43200 < th dose dependent rect. 23 1
345 112.10 temperature 15 720 < th dose independent rect. 23 3
388 112.38 temperature 15 720 > th dose independent rect. 12 23
393 112.42 temperature 15 720 > th dose independent rect. 7 8
410 112.50 atmosphere 1015 4320 > th dose dependent rect. 10 10
412 112.52 temperature 15 4320 > th dose independent rect. 3 10
423 112.57 temperature 15 720 > th dose independent rect. 1 23
424 112.57 atmosphere 1015 4320 > th dose dependent rect. 11 8
428 112.59 temperature 15 1440 > th dose independent rect. 23 14
429 112.59 temperature 15 4320 < th dose independent rect. 3 20
446 112.63 temperature 15 4320 > th dose independent rect. 6 7
451 112.64 temperature 15 4320 > th dose independent rect. 3 19
454 112.65 temperature 15 4320 < th dose independent rect. 22 1
464 112.67 temperature 15 4320 < th dose independent rect. 16 7
470 112.68 temperature 15 4320 < th dose independent rect. 13 10
480 112.71 temperature 15 4320 < th dose independent rect. 17 1
481 112.71 temperature 15 4320 > th dose independent rect. 3 21
492 112.73 atmosphere 1015 4320 > th dose dependent rect. 11 6
493 112.73 temperature 20 720 < th dose dependent rect. 5 23
497 112.74 temperature 20 720 < th dose dependent rect. 3 23
506 112.75 temperature 15 4320 > th dose independent rect. 6 16
519 112.77 temperature 15 4320 > th dose independent rect. 6 18
520 112.78 temperature 15 4320 < th dose independent rect. 16 5
530 112.80 temperature 15 4320 < th dose independent rect. 5 10
541 112.82 temperature 15 4320 > th dose independent rect. 3 6
546 112.82 temperature 15 1440 < th dose dependent rect. 2 2
548 112.83 atmosphere 1015 4320 > th dose independent rect. 12 3
552 112.84 temperature 15 4320 < th dose independent sin 23 NA
553 112.84 temperature 15 4320 < th dose independent rect. 3 1
571 112.86 temperature 15 4320 < th dose independent rect. 13 2
573 112.86 atmosphere 1015 4320 > th dose independent rect. 11 9
580 112.87 temperature 20 720 < th dose dependent rect. 9 23
590 112.89 atmosphere 1015 4320 < th dose independent rect. 13 2
592 112.89 temperature 15 4320 > th dose independent rect. 3 8
599 112.90 temperature 15 4320 > th dose independent rect. 12 12
609 112.92 atmosphere 1015 4320 < th dose independent rect. 12 8
610 112.92 temperature 15 4320 > th dose independent rect. 12 10
620 112.93 temperature 15 4320 > th dose independent rect. 8 16
636 112.95 temperature 15 4320 > th dose independent rect. 3 4
645 112.96 temperature 15 4320 > th dose independent rect. 8 14
648 112.97 atmosphere 1015 4320 > th dose independent rect. 12 5
651 112.97 temperature 15 1440 < th dose independent rect. 24 10
681 112.99 temperature 15 4320 < th dose independent rect. 6 5
688 112.99 temperature 15 720 > th dose independent rect. 21 23
697 113.00 temperature 15 4320 > th dose independent rect. 10 14
701 113.01 atmosphere 1015 4320 < th dose independent rect. 12 5
727 113.03 humidity 60 43200 < th dose dependent rect. 23 8
740 113.04 humidity 60 43200 < th dose dependent rect. 3 4
750 113.05 temperature 15 4320 > th dose independent rect. 10 12
761 113.06 temperature 20 4320 < th dose dependent rect. 13 1
768 113.07 temperature 15 4320 > th dose independent rect. 15 9
772 113.08 humidity 50 43200 < th dose independent rect. 3 1
777 113.08 temperature 15 4320 < th dose independent rect. 9 5
789 113.09 temperature 15 720 > th dose independent no NA NA
806 113.10 humidity 50 43200 < th dose independent rect. 6 1
827 113.11 humidity 50 43200 < th dose dependent rect. 19 12
843 113.13 humidity 50 43200 < th dose independent rect. 3 4
857 113.14 temperature 15 4320 > th dose independent rect. 15 7
918 113.19 humidity 70 43200 < th dose independent rect. 3 1
996 113.26 temperature 15 4320 < th dose dependent rect. 17 11
999 113.27 temperature 15 4320 > th dose independent sin 23 NA
1000 113.27 temperature 15 4320 < th dose independent rect. 9 1