BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0921500 Os01g0921500|AK105517
         (435 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48530.1  | chr3:17987559-17989592 FORWARD LENGTH=425          434   e-122
AT1G69800.2  | chr1:26274416-26276325 REVERSE LENGTH=477          171   6e-43

>AT3G48530.1 | chr3:17987559-17989592 FORWARD LENGTH=425
          Length = 424

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/415 (51%), Positives = 290/415 (69%), Gaps = 23/415 (5%)

Query: 31  SPEAEIGMRVEDIWDSLDQPQLSDRDRLNSCFDAIPVASFPHTFDGAQVVEIPSDATLAE 90
           SPEA++GMRVED+WD   +PQLS  ++LN+CF++IPV++FP + D +Q +EI SD +LAE
Sbjct: 23  SPEAKLGMRVEDLWDE-QKPQLSPNEKLNACFESIPVSAFPLSSD-SQDIEIRSDTSLAE 80

Query: 91  AVDILSRHRIITAPVRNVDAPDDASWIDRYIGVVEFAGIAVWLLHQSEXXXXXXXXXXXX 150
           AV  LS+ ++++APV +VDAP+DASWIDRYIG+VEF GI VWLLHQ E            
Sbjct: 81  AVQTLSKFKVLSAPVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLEPPSPRSP----- 135

Query: 151 XXXXXXGTVALEGAAAARAPDQQQSAEGAVAEA--FGALPSSDLFNKTKVKDISGSFRWA 208
                    A  G +     D   + + AV     F  L SS+L+  TKV+DISG+FRWA
Sbjct: 136 ------AVAASNGFSHDFTTDVLDNGDSAVTSGNFFEVLTSSELYKNTKVRDISGTFRWA 189

Query: 209 PFLALQSSDTFLTMLLLLSKYRMKSLPVVDIGEGTISNVITQAAVVHMLAECAGLHWFED 268
           PFLALQ  ++FLTMLLLLSKY+MKS+PVVD+G   I N+ITQ+ V+HMLAECAGL WFED
Sbjct: 190 PFLALQKENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGVIHMLAECAGLLWFED 249

Query: 269 WGAKSLTELGLPMIRPSRLVKVRHDEPALKAFRLMRKRGVGGIPVVD-HAGKPTGSIMIK 327
           WG K+L+E+GLP++    ++K+  DEP L+AF+LMR++ +GGIPV++ ++ KP G+I ++
Sbjct: 250 WGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIERNSEKPVGNISLR 309

Query: 328 DVKHLLASSDANRDYRTLTAQEFIANARQ-------SSGEKQMNIVTCXXXXXXXXXXFK 380
           DV+ LL + +   DYR++T + F+ + R+       +S      ++ C            
Sbjct: 310 DVQFLLTAPEIYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILM 369

Query: 381 LDAEKRQRIYVVDEQGNLDGLITLRDIIAKLVYEPPGYFGDFFNGVFPLPQNSRV 435
           LDAEK  RIYVVD+ GNL+GLITLRDIIA+LV+EP GYFGDFF+GV PLP+N RV
Sbjct: 370 LDAEKIHRIYVVDDFGNLEGLITLRDIIARLVHEPSGYFGDFFDGVMPLPENYRV 424



>AT1G69800.2 | chr1:26274416-26276325 REVERSE LENGTH=477
          Length = 476

 Score =  171 bits (434), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 4/231 (1%)

Query: 193 FNKTKVKDISGSFRWAPFLALQSSDTFLTMLLLLSKYRMKSLPVVDIGEGTISNVITQAA 252
           F  T V+ I  SFRWAPFL + +  + L+++LLLSKYR++++PV+  GE  I N +TQ+A
Sbjct: 232 FKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRNVPVIKTGEPDIKNYVTQSA 291

Query: 253 VVHMLAECAGLHWFEDWGAKSLTELGLPMIRPSRLVKVRHDEPALKAFRLMRKRGVGGIP 312
           VVH L  C G  WF+   A  +++LGLP + P+ ++ +  +E  L+AF+ MR   +GG+P
Sbjct: 292 VVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESEELILEAFKRMRDNNIGGLP 351

Query: 313 VVDHAGKP-TGSIMIKDVKHLLASSDANRDYRTLTAQEFIANARQSSGEKQMNI--VTCX 369
           VV+   K   G+I ++D+++LL   +   ++R LT + F      +  E  + I  +TC 
Sbjct: 352 VVEGLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFATKIATAGEEYGLAIPAITCR 411

Query: 370 XXXXXXXXXFKLDAEKRQRIYV-VDEQGNLDGLITLRDIIAKLVYEPPGYF 419
                      L +    R+YV   ++  L G+ITLRD+I+  V EPP YF
Sbjct: 412 PDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVISCFVSEPPNYF 462




 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 75/130 (57%), Gaps = 6/130 (4%)

Query: 9   TKEEQWRGEERVVESPLGSARWSPEAEIGMRVEDIWDSLDQPQLSDRDRLNSCFDAIPVA 68
           ++ +   G E V +  + SA  S EA      E +    + P+ S ++ LNS F  IPV+
Sbjct: 25  SRYQDMAGSEAVEDKEIKSAVSSCEAYF----EKVQSRKNLPK-SLQETLNSAFAGIPVS 79

Query: 69  SFPHTFDGAQVVEIPSDATLAEAVDILSRHRIITAPVRNVDAPDDASWIDRYIGVVEFAG 128
           SFP    G +V+EI ++  ++EAV ILS  +I++APV N D      W +RY+G+++++ 
Sbjct: 80  SFPQV-PGGRVIEIQAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSS 138

Query: 129 IAVWLLHQSE 138
           I +W+L  +E
Sbjct: 139 IILWVLESAE 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,459,063
Number of extensions: 323072
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 3
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)