Os01g0586600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CBS domain containing protein.
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Os01g0586600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CBS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.98 | 0.176 | 9.07 | 0.225 | 0.499 | 0.967 | -0.088 | 0.124 | -0.0173 | 3.06 | 6.571 | 614 | -- | -- |
| 13.98 | 0.174 | 9.07 | 0.208 | 0.514 | 0.972 | -0.0719 | -- | -0.0203 | 3.02 | 6.702 | 588 | -- | -- |
| 13.99 | 0.174 | 9.07 | 0.23 | 0.514 | 0.973 | -- | 0.136 | -0.0168 | 3.05 | 6.299 | 585 | -- | -- |
| 14 | 0.174 | 9.07 | 0.208 | 0.516 | 0.975 | -- | -- | -0.0224 | 3.05 | 6.437 | 584 | -- | -- |
| 21.13 | 0.214 | 9.07 | 0.179 | -- | 1.03 | -- | 0.11 | -0.0349 | -- | 4.528 | 1024 | -- | -- |
| 25.26 | 0.236 | 9.05 | 0.437 | 0.467 | -- | -0.0384 | -- | 0.124 | 1.1 | -- | -- | -- | -- |
| 25.27 | 0.235 | 9.05 | 0.438 | 0.467 | -- | -- | -- | 0.124 | 1.09 | -- | -- | -- | -- |
| 21.14 | 0.214 | 9.08 | 0.157 | -- | 1.03 | -- | -- | -0.0407 | -- | -5.497 | 1023 | -- | -- |
| 15 | 0.18 | 9.08 | -- | 0.521 | 1.07 | -- | -- | -0.0577 | 3.22 | 13.08 | 596 | -- | -- |
| 38.79 | 0.291 | 9.04 | 0.456 | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
| 30.33 | 0.258 | 9.06 | -- | 0.474 | -- | -- | -- | 0.0756 | 1.13 | -- | -- | -- | -- |
| 21.71 | 0.217 | 9.08 | -- | -- | 1.09 | -- | -- | -0.0694 | -- | 14.8 | 1030 | -- | -- |
| 44.27 | 0.311 | 9.05 | -- | -- | -- | -- | -- | 0.0831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 13 | 12.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 58 | 13.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 71 | 13.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 78 | 14.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 80 | 14.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 87 | 14.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 107 | 14.13 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 114 | 14.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 224 | 14.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 233 | 14.43 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 280 | 14.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 282 | 14.52 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 18 |
| 292 | 14.54 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 307 | 14.56 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 376 | 14.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 443 | 14.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 458 | 14.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 595 | 14.89 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 818 | 14.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 986 | 15.05 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |