BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0586600 Os01g0586600|AK069698
(450 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0586600 CBS domain containing protein 731 0.0
Os04g0382300 Similar to SNF1-related protein kinase regulat... 159 5e-39
Os01g0921500 Similar to SNF1-related protein kinase regulat... 144 1e-34
Os01g0633400 CBS domain containing protein 76 5e-14
>Os01g0586600 CBS domain containing protein
Length = 450
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/450 (82%), Positives = 371/450 (82%)
Query: 1 MDRPDETVKFPSCDAYFDTIQSKKKLPLSLQESLTAAFAQIPVSSFPDVPNGRVIEIPGD 60
MDRPDETVKFPSCDAYFDTIQSKKKLPLSLQESLTAAFAQIPVSSFPDVPNGRVIEIPGD
Sbjct: 1 MDRPDETVKFPSCDAYFDTIQSKKKLPLSLQESLTAAFAQIPVSSFPDVPNGRVIEIPGD 60
Query: 61 TSVLDAVRILSKHNIRAAPVLNPECGAPADWKGRYLGIIDYSAIILWVLENAEIXXXXXX 120
TSVLDAVRILSKHNIRAAPVLNPECGAPADWKGRYLGIIDYSAIILWVLENAEI
Sbjct: 61 TSVLDAVRILSKHNIRAAPVLNPECGAPADWKGRYLGIIDYSAIILWVLENAEIAAVALS 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKGVAKDGLTAA 180
EKGVAKDGLTAA
Sbjct: 121 AGSATAAGVGMGAVGAVGVAALGATGPAAVAGLTAAAVGAAVAGGLTAEKGVAKDGLTAA 180
Query: 181 DHLGEDFYKVLLQQEPFKSTTVRSIVESYRWSPFVPIXXXXXXXXXXXXXSKYRLRNVPV 240
DHLGEDFYKVLLQQEPFKSTTVRSIVESYRWSPFVPI SKYRLRNVPV
Sbjct: 181 DHLGEDFYKVLLQQEPFKSTTVRSIVESYRWSPFVPITLDTSMLTVLLLLSKYRLRNVPV 240
Query: 241 IEPDKPIIKNFITQTGVVKGLQQCKGRDWFDYISALPLSDLGLPFMSLDEVITVNSGDLI 300
IEPDKPIIKNFITQTGVVKGLQQCKGRDWFDYISALPLSDLGLPFMSLDEVITVNSGDLI
Sbjct: 241 IEPDKPIIKNFITQTGVVKGLQQCKGRDWFDYISALPLSDLGLPFMSLDEVITVNSGDLI 300
Query: 301 LEAFKCMKDNKIGGVPVVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMKTIG 360
LEAFKCMKDNKIGGVPVVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMKTIG
Sbjct: 301 LEAFKCMKDNKIGGVPVVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMKTIG 360
Query: 361 STVSDSGNGLVKPPLTCSPDASLGSVIDSIASRITHRIYXXXXXXXXXXXXTLRDVISCF 420
STVSDSGNGLVKPPLTCSPDASLGSVIDSIASRITHRIY TLRDVISCF
Sbjct: 361 STVSDSGNGLVKPPLTCSPDASLGSVIDSIASRITHRIYVVDGDFEVVGVVTLRDVISCF 420
Query: 421 IYEPPGYCDNYLASAMDKLEEKGAGSVDTS 450
IYEPPGYCDNYLASAMDKLEEKGAGSVDTS
Sbjct: 421 IYEPPGYCDNYLASAMDKLEEKGAGSVDTS 450
>Os04g0382300 Similar to SNF1-related protein kinase regulatory gamma subunit 1
(AKIN gamma1) (AKING1)
Length = 425
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 138/252 (54%), Gaps = 2/252 (0%)
Query: 183 LGEDFYKVLLQQEPFKSTTVRSIVESYRWSPFVPIXXXXXXXXXXXXXSKYRLRNVPVIE 242
+G F++ L E +K+T V I S+RW+PF+ + SKYR++++PV++
Sbjct: 162 VGGSFFETLTSSEFYKNTKVGDISGSFRWAPFLALQTSDTFLTMLLLLSKYRMKSLPVVD 221
Query: 243 PDKPIIKNFITQTGVVKGLQQCKGRDWFDYISALPLSDLGLPFMSLDEVITVNSGDLILE 302
I+N ITQ+ VV L +C G WF+ LS+LGLP M +++ VN +L+
Sbjct: 222 IGGDKIENIITQSSVVHMLAECVGLPWFESWGTKKLSELGLPLMKPCKLVKVNEDQPVLK 281
Query: 303 AFKCMKDNKIGGVPVVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMKTIGST 362
AF+ M++ +GG+PV++ K +G++SIRD+++LL P+++ ++R +T +F+ +
Sbjct: 282 AFQLMREKGVGGLPVMDTSGTKAIGNISIRDVQYLLTAPNIYKDYRTITAKDFLTAVRQH 341
Query: 363 VSDSGNG--LVKPPLTCSPDASLGSVIDSIASRITHRIYXXXXXXXXXXXXTLRDVISCF 420
+ + L+ +TC D + +I + S HRIY TLRD+IS
Sbjct: 342 LQEQHEASPLLGSVITCRRDDEVKDIILKLDSEKIHRIYVIDDKGNTEGVITLRDIISKL 401
Query: 421 IYEPPGYCDNYL 432
++EP Y ++
Sbjct: 402 VHEPRHYFGDFF 413
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 28 LSLQESLTAAFAQIPVSSFPDVPNGRVIEIPGDTSVLDAVRILSKHNIRAAPVLNPECGA 87
LS E L + F I V+SFP +VIEIP + S+ D V ILSK+ I +AP+ N +
Sbjct: 28 LSPSEKLNSCFEDIAVASFPRPLGSQVIEIPSNASLADTVEILSKNKILSAPIRNVDAPE 87
Query: 88 PADWKGRYLGIIDYSAIILWVLENAE 113
A W +Y+GI++++ I +W+L +E
Sbjct: 88 DASWIDKYIGIVEFAGIAMWLLYQSE 113
>Os01g0921500 Similar to SNF1-related protein kinase regulatory gamma subunit 1
(AKIN gamma1) (AKING1)
Length = 435
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 5/236 (2%)
Query: 197 FKSTTVRSIVESYRWSPFVPIXXXXXXXXXXXXXSKYRLRNVPVIEPDKPIIKNFITQTG 256
F T V+ I S+RW+PF+ + SKYR++++PV++ + I N ITQ
Sbjct: 193 FNKTKVKDISGSFRWAPFLALQSSDTFLTMLLLLSKYRMKSLPVVDIGEGTISNVITQAA 252
Query: 257 VVKGLQQCKGRDWFDYISALPLSDLGLPFMSLDEVITVNSGDLILEAFKCMKDNKIGGVP 316
VV L +C G WF+ A L++LGLP + ++ V + L+AF+ M+ +GG+P
Sbjct: 253 VVHMLAECAGLHWFEDWGAKSLTELGLPMIRPSRLVKVRHDEPALKAFRLMRKRGVGGIP 312
Query: 317 VVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMKTIGSTVSDSGNGLVKPPLT 376
VV+ K GS+ I+D++ LL D ++R LT EF+ + + +V T
Sbjct: 313 VVDHAGKP-TGSIMIKDVKHLLASSDANRDYRTLTAQEFIANARQSSGEKQMNIV----T 367
Query: 377 CSPDASLGSVIDSIASRITHRIYXXXXXXXXXXXXTLRDVISCFIYEPPGYCDNYL 432
C + S+ +I + + RIY TLRD+I+ +YEPPGY ++
Sbjct: 368 CKKEESIKEIIFKLDAEKRQRIYVVDEQGNLDGLITLRDIIAKLVYEPPGYFGDFF 423
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 28 LSLQESLTAAFAQIPVSSFPDVPNG-RVIEIPGDTSVLDAVRILSKHNIRAAPVLNPECG 86
LS ++ L + F IPV+SFP +G +V+EIP D ++ +AV ILS+H I APV N +
Sbjct: 52 LSDRDRLNSCFDAIPVASFPHTFDGAQVVEIPSDATLAEAVDILSRHRIITAPVRNVDAP 111
Query: 87 APADWKGRYLGIIDYSAIILWVLENAE 113
A W RY+G+++++ I +W+L +E
Sbjct: 112 DDASWIDRYIGVVEFAGIAVWLLHQSE 138
>Os01g0633400 CBS domain containing protein
Length = 407
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 4/173 (2%)
Query: 186 DFYKVLLQQEPFKSTTVRSIVESYRWSPFVPIXXXXXXXXXXXXXSKYRLRNV-PVIEPD 244
DF L Q T + + +S+ W PF P+ SK+R NV PV+E
Sbjct: 122 DFLTSLKQHPQIAETKIAWLAKSFLWEPFFPVRSHDTLFHAMLLFSKHRRINVVPVVELM 181
Query: 245 KPIIKNFITQTGVVKGLQQCKGRDWFDYISALPLSDLGLPFMSLDEVITVNSGDLILEAF 304
+ F+TQ V++ L G +W D I+ LS+ F + + ++V S + +A
Sbjct: 182 NSSVIGFVTQNAVMELLLSSSGLEWLDKIADKQLSE--FRFANTTKPVSVYSDQTLADAL 239
Query: 305 KCMKDNKIGGVPVVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMK 357
+ KI GV VV+ L+GS+ D+ LL LF N + L+ EF+K
Sbjct: 240 HILSKEKI-GVAVVDRKTSCLIGSIQCSDLYQLLDDSSLFRNRKTLSAEEFVK 291
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,690,415
Number of extensions: 456561
Number of successful extensions: 826
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 7
Length of query: 450
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 346
Effective length of database: 11,605,545
Effective search space: 4015518570
Effective search space used: 4015518570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)