BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0610700 Os01g0610700|AK068000
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0610700 RINGv domain containing protein 534 e-152
Os08g0384900 RINGv domain containing protein 390 e-109
Os11g0604600 RINGv domain containing protein 165 4e-41
Os02g0132300 Similar to Erythrocyte membrane protein PFEMP3... 163 2e-40
>Os01g0610700 RINGv domain containing protein
Length = 309
Score = 534 bits (1376), Expect = e-152, Method: Compositional matrix adjust.
Identities = 264/309 (85%), Positives = 264/309 (85%)
Query: 1 MQEPQRIHRDAGGYPAAAAETDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAACCRICLE 60
MQEPQRIHRDAGGYPAAAAETD SAACCRICLE
Sbjct: 1 MQEPQRIHRDAGGYPAAAAETDPLLAHPPPPRSPAEIEDEEIEDEEIEAASAACCRICLE 60
Query: 61 SETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVECLEDNL 120
SETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVECLEDNL
Sbjct: 61 SETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVECLEDNL 120
Query: 121 CRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWEHILSNHPVPF 180
CRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWEHILSNHPVPF
Sbjct: 121 CRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWEHILSNHPVPF 180
Query: 181 YYCXXXXXXXXXXXXXXXXXQCSSFNTNDPCLAGCRNCCYGWGILDFPASIEACLALAVI 240
YYC QCSSFNTNDPCLAGCRNCCYGWGILDFPASIEACLALAVI
Sbjct: 181 YYCVGVVVFFVMVGFIGLIVQCSSFNTNDPCLAGCRNCCYGWGILDFPASIEACLALAVI 240
Query: 241 FVIVFAILGVAYGFFAATVAVQRILQRHYHILTKRELTKEYVVEDLRGCYTPPKMDPEQE 300
FVIVFAILGVAYGFFAATVAVQRILQRHYHILTKRELTKEYVVEDLRGCYTPPKMDPEQE
Sbjct: 241 FVIVFAILGVAYGFFAATVAVQRILQRHYHILTKRELTKEYVVEDLRGCYTPPKMDPEQE 300
Query: 301 QRLRTLQLM 309
QRLRTLQLM
Sbjct: 301 QRLRTLQLM 309
>Os08g0384900 RINGv domain containing protein
Length = 314
Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/261 (73%), Positives = 212/261 (81%), Gaps = 2/261 (0%)
Query: 51 SAACCRICLESETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFH 110
SA CCRICLE+++E GDELISPCMCKGTQQFVHR CLDHWRSVKEG AFSHCTTCKAQFH
Sbjct: 54 SAGCCRICLETDSELGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFH 113
Query: 111 LRVECLEDNLCRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWE 170
LRVE EDN RKM FR+FVARDV LVFLAVQ IA IG ++Y LD+DG FRNSFSDGW+
Sbjct: 114 LRVETWEDNSWRKMKFRIFVARDVILVFLAVQLTIAMIGAISYFLDRDGSFRNSFSDGWD 173
Query: 171 HILSNHPVPFYYCXXXXXXXXXXXXXXXXXQCSSFNTN-DPCLAGCRNCCYGWGILD-FP 228
LS HP+PFYYC CSSFN N DPCLAGCRNCCYGWG+LD P
Sbjct: 174 RFLSKHPIPFYYCIGVVVFFVLLGFFGLILHCSSFNDNQDPCLAGCRNCCYGWGVLDCLP 233
Query: 229 ASIEACLALAVIFVIVFAILGVAYGFFAATVAVQRILQRHYHILTKRELTKEYVVEDLRG 288
AS+EAC AL V+FV+VFAILG+AYGF AAT+AVQRI QRHYHILTKRELTKEYVVEDL G
Sbjct: 234 ASLEACFALVVVFVVVFAILGIAYGFLAATMAVQRIWQRHYHILTKRELTKEYVVEDLHG 293
Query: 289 CYTPPKMDPEQEQRLRTLQLM 309
YTPPK+DPE E+RL+ L+L+
Sbjct: 294 SYTPPKLDPEHEERLKMLKLL 314
>Os11g0604600 RINGv domain containing protein
Length = 325
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 143/296 (48%), Gaps = 49/296 (16%)
Query: 55 CRICLESETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVE 114
CRICLE++ G + I+PC CKGT ++VHR CLDHWR+VKEG AFSHCTTCKA ++LRV
Sbjct: 38 CRICLETD---GRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVH 94
Query: 115 CLEDNLCRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWEHILS 174
D R + FR FV RD+ +F VQ VI+A+ + + + DG W
Sbjct: 95 VHTDRKWRTLKFRFFVTRDILFIFALVQFVISALAYLVHFI--DGLQNYWLRTAWAF--- 149
Query: 175 NHPVPFYYCXXXXXXXXXXXXXXXXXQCSSFNTND----PCLAGCRNCCYGWGILD--FP 228
++ V FYY C + PC C CC D P
Sbjct: 150 DNEVSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCADCHLP 209
Query: 229 ASI----------EAC----------------------LALAVIFVIVFAILGVAYGFFA 256
++ E C + VI + +F ++G+ Y
Sbjct: 210 GTLCMWTDCTTCFEGCATTAGECGGCLGGAGEAGLPLLFIMGVIVLGLFTVIGIFYSVLV 269
Query: 257 ATVAVQRILQRHYHILTKRELTKEYVVEDL---RGCYTPPKMDPEQEQRLRTLQLM 309
AT+ QRI QRHYHIL KR LTKEYVVED+ R + PP + E Q+L++L L+
Sbjct: 270 ATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGERADWCPPPLPSEHVQQLKSLGLL 325
>Os02g0132300 Similar to Erythrocyte membrane protein PFEMP3 (Fragment)
Length = 272
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 126/254 (49%), Gaps = 67/254 (26%)
Query: 55 CRICLESETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVE 114
CRICL++E GD+LI+PC CKGTQ++VHR CLD+WRS KEG AFSHCT C+A F LR
Sbjct: 85 CRICLDNE---GDDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAAFLLRAN 141
Query: 115 CLEDNLCRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWEHILS 174
D ++ F+L V RD L+F VQ V+A +G + Y D + R F G+E
Sbjct: 142 VPPDRWWLRLKFQLLVVRDHTLIFFIVQLVVALLGMLVYRFYGD-ELREMF--GYE---- 194
Query: 175 NHPVPFYYCXXXXXXXXXXXXXXXXXQCSSFNTNDPCLAGCRNCCYGWGILDFPASIEAC 234
HP FY A
Sbjct: 195 EHPYAFY---------------------------------------------------AM 203
Query: 235 LALAVIFVIVFAILGVAYGFFAATVAVQRILQRHYHILTKRELTKEYVVEDLRGCYTPPK 294
LA++ V G+ YGFF A + QRI +RHYH+L K+ELTKEY+VEDL G P
Sbjct: 204 AILAIVLV------GLLYGFFIAIICGQRITERHYHVLAKQELTKEYIVEDLEGTDGVPD 257
Query: 295 MDPEQEQRLRTLQL 308
+DP LR L L
Sbjct: 258 LDPNHVTELRILGL 271
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.140 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,522,664
Number of extensions: 319964
Number of successful extensions: 894
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 6
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)