BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0610600 Os01g0610600|AK120276
(903 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0610600 Endonuclease/exonuclease/phosphatase domain co... 1714 0.0
Os06g0264900 Endonuclease/exonuclease/phosphatase domain co... 184 3e-46
Os10g0412100 Endonuclease/exonuclease/phosphatase domain co... 116 6e-26
Os03g0166800 Endonuclease/exonuclease/phosphatase domain co... 113 6e-25
Os05g0389500 Endonuclease/exonuclease/phosphatase domain co... 99 1e-20
Os10g0203000 Endonuclease/exonuclease/phosphatase domain co... 68 3e-11
>Os01g0610600 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 903
Score = 1714 bits (4439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/886 (94%), Positives = 841/886 (94%)
Query: 18 YYNARGSARPRRGYYSGRPTPPPHHHHDAGAELVSGDSHHSAVRASNDSLXXXXXXXXXX 77
YYNARGSARPRRGYYSGRPTPPPHHHHDAGAELVSGDSHHSAVRASNDSL
Sbjct: 18 YYNARGSARPRRGYYSGRPTPPPHHHHDAGAELVSGDSHHSAVRASNDSLRRGGGRGPPP 77
Query: 78 SLYGYAPPQPPPALYGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPNPYV 137
SLYGYAPPQPPPALYGAV ATPNPYV
Sbjct: 78 SLYGYAPPQPPPALYGAVPYNYGHPQQPGPPYGAVPYNYGPPPPQPQDPQYGYATPNPYV 137
Query: 138 QGHPQPYWRGPTNAGFRPPYAGFRPGAPQQSPRLAEYRRRWRFTQHRPPRQAERFKVLSY 197
QGHPQPYWRGPTNAGFRPPYAGFRPGAPQQSPRLAEYRRRWRFTQHRPPRQAERFKVLSY
Sbjct: 138 QGHPQPYWRGPTNAGFRPPYAGFRPGAPQQSPRLAEYRRRWRFTQHRPPRQAERFKVLSY 197
Query: 198 NILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEVDKFTDLEQEMA 257
NILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEVDKFTDLEQEMA
Sbjct: 198 NILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEVDKFTDLEQEMA 257
Query: 258 TRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDIEFNKIDLRDNVAQICVLESVIPGN 317
TRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDIEFNKIDLRDNVAQICVLESVIPGN
Sbjct: 258 TRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDIEFNKIDLRDNVAQICVLESVIPGN 317
Query: 318 VQTESSPNHPQQAKQIIVCNTHVLYNPKRGDIKLGQVRTLLDRVYALSKTWNDAPVIICG 377
VQTESSPNHPQQAKQIIVCNTHVLYNPKRGDIKLGQVRTLLDRVYALSKTWNDAPVIICG
Sbjct: 318 VQTESSPNHPQQAKQIIVCNTHVLYNPKRGDIKLGQVRTLLDRVYALSKTWNDAPVIICG 377
Query: 378 DFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQQTSTAQGLYTGPNTARFYPPFHTTNSKE 437
DFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQQTSTAQGLYTGPNTARFYPPFHTTNSKE
Sbjct: 378 DFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQQTSTAQGLYTGPNTARFYPPFHTTNSKE 437
Query: 438 GSISYPNDHKPQPEARNVTENSRLSGREPTLTDTASDSFLNPESSTNPHEQELMGCVKGP 497
GSISYPNDHKPQPEARNVTENSRLSGREPTLTDTASDSFLNPESSTNPHEQELMGCVKGP
Sbjct: 438 GSISYPNDHKPQPEARNVTENSRLSGREPTLTDTASDSFLNPESSTNPHEQELMGCVKGP 497
Query: 498 TKEAYTSDAEAHTNTTNGEETSVVNNSSEGYGVIKKSSVEETNVTNFSSASTTVNDETLQ 557
TKEAYTSDAEAHTNTTNGEETSVVNNSSEGYGVIKKSSVEETNVTNFSSASTTVNDETLQ
Sbjct: 498 TKEAYTSDAEAHTNTTNGEETSVVNNSSEGYGVIKKSSVEETNVTNFSSASTTVNDETLQ 557
Query: 558 SDSSEIVDRSQLLPSYESSESKDSWEELAGGSNNSSNTLANFPGHVISGKATCDFERNNV 617
SDSSEIVDRSQLLPSYESSESKDSWEELAGGSNNSSNTLANFPGHVISGKATCDFERNNV
Sbjct: 558 SDSSEIVDRSQLLPSYESSESKDSWEELAGGSNNSSNTLANFPGHVISGKATCDFERNNV 617
Query: 618 QSDTLFDISKVRPDEKEQDSEPLSTQNNCMRSESKSNCFSDPLKFADTLHQMSNLRLEEE 677
QSDTLFDISKVRPDEKEQDSEPLSTQNNCMRSESKSNCFSDPLKFADTLHQMSNLRLEEE
Sbjct: 618 QSDTLFDISKVRPDEKEQDSEPLSTQNNCMRSESKSNCFSDPLKFADTLHQMSNLRLEEE 677
Query: 678 NNTEPTQLTSPLEPLQHTDCAFSDTCDVQCTPEVINRLSKSHSCSNELGNCSCAFEDDGA 737
NNTEPTQLTSPLEPLQHTDCAFSDTCDVQCTPEVINRLSKSHSCSNELGNCSCAFEDDGA
Sbjct: 678 NNTEPTQLTSPLEPLQHTDCAFSDTCDVQCTPEVINRLSKSHSCSNELGNCSCAFEDDGA 737
Query: 738 SNEVLCSDVNADPSIFKEFSGVNEFLLEDEDQLQTTSDGSPSAQQVITSDKRYYDYDPYR 797
SNEVLCSDVNADPSIFKEFSGVNEFLLEDEDQLQTTSDGSPSAQQVITSDKRYYDYDPYR
Sbjct: 738 SNEVLCSDVNADPSIFKEFSGVNEFLLEDEDQLQTTSDGSPSAQQVITSDKRYYDYDPYR 797
Query: 798 WTPDEIKAATGNEDCTFVEHNLKVRSVYTDVEDFEGTKDANKEPLVTSYNRKFMGTVDYI 857
WTPDEIKAATGNEDCTFVEHNLKVRSVYTDVEDFEGTKDANKEPLVTSYNRKFMGTVDYI
Sbjct: 798 WTPDEIKAATGNEDCTFVEHNLKVRSVYTDVEDFEGTKDANKEPLVTSYNRKFMGTVDYI 857
Query: 858 WASEDLQTVQVLDTFPKEILKQTIGFPTKKWGSDHIALVCELAFTK 903
WASEDLQTVQVLDTFPKEILKQTIGFPTKKWGSDHIALVCELAFTK
Sbjct: 858 WASEDLQTVQVLDTFPKEILKQTIGFPTKKWGSDHIALVCELAFTK 903
>Os06g0264900 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 300
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 147/258 (56%), Gaps = 22/258 (8%)
Query: 153 FRPPYAGFRPGAPQQSPRLAEY---RRRWRFTQHRPPRQAERFKVLSYNILADYLAQEHQ 209
++ P AG PG Q R +Y RRW + + ++SYNILAD A H
Sbjct: 51 WQSPAAG-SPGRVYQRHRAQQYGVPSRRWVLAEEASTSDGDACTIMSYNILADNNAHYHP 109
Query: 210 FLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEVDKFTDLEQEMATRGYNGIWKMRT 269
LY +P M W+ R+ ++ E W PD++CLQEVD+F D+ EM RGY +K RT
Sbjct: 110 DLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRT 169
Query: 270 GNATDGCAIFWRTARFQLRYQEDIEFNKIDLRDNVAQICVLESVIPGNVQTESSPNHPQQ 329
G+A DGCA FW++ L ++ I+F++ +LR+NVAQI V E +
Sbjct: 170 GDAKDGCATFWKSKGLHLLEEDSIDFSEYNLRNNVAQIFVFEL---------------NR 214
Query: 330 AKQIIVCNTHVLYNPKRGDIKLGQVRTLLDRVYALSKTWNDAPVIICGDFNSTPKSPLYN 389
A++++V N HVL+NPKRGD+KLGQ+R LL++ AL++ W P+++ GDFNSTP +
Sbjct: 215 AQKLVVGNIHVLFNPKRGDVKLGQIRMLLEKANALAEKWGGIPIVLAGDFNSTPD---LD 271
Query: 390 FMLEQKLNLSGLVKSNIS 407
L + LSGL S +
Sbjct: 272 ISLHDRRQLSGLDSSEFA 289
>Os10g0412100 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 605
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 122/236 (51%), Gaps = 38/236 (16%)
Query: 192 FKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEV--DKF 249
F VLSYNILAD A + Y P++ + W +R++ L+ E + DI+CLQEV + F
Sbjct: 254 FSVLSYNILADAYATSDAYSY--CPTWALSWTYRRQNLMREIIGYHADIICLQEVQLNHF 311
Query: 250 TD-LEQEMATRGYNGIWKMRTG-------NATDGCAIFWRTARFQLRYQEDIEFNKID-- 299
D E+ GY ++K RT +A DGCA F+R +F + ++EFNK
Sbjct: 312 EDFFSPELDKHGYQALYKKRTTEVYTGAPHAIDGCATFFRRDKFSHVKKYEVEFNKAAQS 371
Query: 300 ------------------LRDNVAQICVLESVIPGNVQTESSPNHPQQAKQIIVCNTHVL 341
++DNVA I VLE+ GN T++ P + + + V NTHV
Sbjct: 372 LTDAIIPSTQRRVALSRLIKDNVALIAVLEAKF-GNHGTDN----PGKRQLLCVANTHVN 426
Query: 342 YNPKRGDIKLGQVRTLLDRVYALSKTWNDAPVIICGDFNSTPKSPLYNFMLEQKLN 397
+ D+KL +V+TLL + ++ + D P+++CGDFNS P S + + K++
Sbjct: 427 VHQDLKDVKLWEVQTLLKGLEKIAVS-ADIPMLVCGDFNSVPGSSPHGLLAMGKVD 481
>Os03g0166800 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 607
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 38/237 (16%)
Query: 192 FKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEV--DKF 249
F VLSYNILAD A + Y P++ + W +R++ L+ E + DI+CLQEV + F
Sbjct: 256 FTVLSYNILADTYATSDTYSY--CPTWALSWPYRRQNLLREIIGYHADIICLQEVQSNHF 313
Query: 250 TD-LEQEMATRGYNGIWKMR-----TGN--ATDGCAIFWRTARFQLRYQEDIEFNKID-- 299
+ E+ GY ++K R TGN + DGCA F+R +F + ++EFNK
Sbjct: 314 EEFFAPELDKHGYQALFKKRTTEVYTGNLQSIDGCATFFRRDKFSHVKKYEVEFNKAAQS 373
Query: 300 ------------------LRDNVAQICVLESVIPGNVQTESSPNHPQQAKQIIVCNTHVL 341
++DN+A I VLE+ + ++P + + + V NTH+
Sbjct: 374 LTDAIIPAAQRKVALTRLIKDNIALIAVLEAKFGSH-----GADNPSKRQLLCVANTHIN 428
Query: 342 YNPKRGDIKLGQVRTLLDRVYALSKTWNDAPVIICGDFNSTPKSPLYNFMLEQKLNL 398
+ D+KL QV TLL + ++ + D P+++CGDFN+TP S + + K++L
Sbjct: 429 VHQDLKDVKLWQVNTLLKGLEKIAVS-ADIPMLVCGDFNATPGSTPHGLLAMGKVDL 484
>Os05g0389500 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 389
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 41/239 (17%)
Query: 191 RFKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEVDKF- 249
+F+++SYNILA + F + PS + W R + ++ E + D++C+QE+D++
Sbjct: 63 QFRLVSYNILAQVYVKSAFFPHS--PSACLKWKTRSKAVLSELKSFEADLMCIQELDEYD 120
Query: 250 TDLEQEMATRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDIEFNKIDLRDNVAQICV 309
T ++ M GY+ I+ R+G+ DGC IF++ +L +E + +N DL +
Sbjct: 121 TFYKKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYN--DLVEKYVHTDH 178
Query: 310 LESVIPGNVQ-TESS-----------PNHPQQAKQ-------------------IIVCNT 338
+ S N TE + PN P+ + +I+ NT
Sbjct: 179 VNSDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANT 238
Query: 339 HVLYNPKRGDIKLGQVRTLLDRV----YALSKTWNDAP-VIICGDFNSTPKSPLYNFML 392
H+ ++P+ D+KL Q + +L RV +S +N P V+I GDFNSTP +YN+++
Sbjct: 239 HIYWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLV 297
>Os10g0203000 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 471
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 35/246 (14%)
Query: 186 PRQAERFKVLSYNILADYLAQEHQFLYERIPS-------FIMDWNWRKEKLVFEFGLWSP 238
PR ++NILA +Y+R+ S + W R EK++
Sbjct: 39 PRDERCVSCTTFNILAP--------IYKRMDSENCRESQYRAYWFSRNEKIIDRLLADCS 90
Query: 239 DILCLQEV----DKFTDL-EQEMATRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDI 293
I+CLQEV D+ D+ E+ + Y+ RT N DG F + ++
Sbjct: 91 SIICLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYREL 150
Query: 294 EFNKIDLRDNVAQICVLESVIPGNVQTESSPNHPQQAKQIIVCNTHVLY--NPKRGDIKL 351
FN D D VAQ+ +ES +P Q SS QQ+ ++ NTH+L+ + ++L
Sbjct: 151 LFN--DFGDRVAQLLHVESAMPF-WQNRSSSCIQQQS---LIVNTHLLFPHDHSLSIVRL 204
Query: 352 GQVRTLLDRV--YALSKTWNDAPVIICGDFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQ 409
QV +L + Y P+I+CGD+N + + +Y F+ Q G V S +
Sbjct: 205 KQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRSQ-----GFVSSYDTAH 259
Query: 410 QTSTAQ 415
Q S ++
Sbjct: 260 QYSDSE 265
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,135,539
Number of extensions: 1380011
Number of successful extensions: 3503
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 3491
Number of HSP's successfully gapped: 6
Length of query: 903
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 793
Effective length of database: 11,292,261
Effective search space: 8954762973
Effective search space used: 8954762973
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)