FiT-DB / Search/ Help/ Sample detail

Os06g0264900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Endonuclease/exonuclease/phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.015) R2 : 0.482
β1 : -1.13 (0.055) R2dD : 0.498 R2D : 0.438
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.172 (0.0321) R2dN8 : 0.044 R2N8 : -0.0155
σ : 0.282
deviance : 36.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.52 0.233 11.6 -1.01 0.333 2.18 0.00873 -6.31 -0.221 7.69 0.447 681 -- --
28.91 0.25 11.6 -1.07 0.322 0.433 0.162 -- -0.191 7.43 0.4108 671 -- --
24.51 0.231 11.6 -1.01 0.333 2.14 -- -6.19 -0.22 7.68 0.4166 677 -- --
28.93 0.251 11.6 -1.08 0.33 0.468 -- -- -0.192 7.5 0.4964 726 -- --
30.49 0.257 11.6 -1.01 -- 2.11 -- -6 -0.215 -- 0.3534 677 -- --
30.36 0.258 11.6 -1.14 0.332 -- 0.148 -- -0.177 7.67 -- -- -- --
30.42 0.258 11.6 -1.13 0.332 -- -- -- -0.177 7.64 -- -- -- --
34.7 0.274 11.6 -1.07 -- 0.495 -- -- -0.187 -- 0.3858 628 -- --
51.93 0.336 11.6 -- 0.332 0.912 -- -- -0.142 7.55 0.5 2219 -- --
36.36 0.282 11.6 -1.13 -- -- -- -- -0.172 -- -- -- -- --
64.37 0.375 11.6 -- 0.324 -- -- -- -0.0509 7.88 -- -- -- --
57.32 0.353 11.6 -- -- 0.909 -- -- -0.131 -- 0.4643 2085 -- --
70.07 0.391 11.6 -- -- -- -- -- -0.047 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.72 temperature 15.0 1440 > th dose independent rect. 1 1
2 23.73 atmosphere 1015.0 1440 < th dose independent rect. 1 1
3 23.86 temperature 15.0 1440 > th dose independent rect. 1 3
4 23.89 atmosphere 1015.0 1440 < th dose independent rect. 1 3
5 23.92 precipitation 0.1 1440 > th dose independent rect. 2 1
6 23.92 precipitation 0.1 1440 > th dose dependent rect. 2 1
7 23.98 precipitation 0.1 720 > th dose independent rect. 1 19
8 23.99 precipitation 0.1 720 > th dose independent sin 2 NA
11 24.00 precipitation 0.1 720 > th dose dependent rect. 6 8
12 24.01 precipitation 0.1 720 > th dose independent rect. 7 7
14 24.04 temperature 15.0 1440 > th dose independent rect. 23 18
15 24.04 precipitation 0.1 720 > th dose dependent sin 2 NA
24 24.10 humidity 60.0 43200 > th dose independent rect. 1 1
25 24.10 precipitation 0.1 720 > th dose dependent rect. 2 15
30 24.13 precipitation 0.1 1440 < th dose independent rect. 6 6
34 24.13 precipitation 0.1 1440 < th dose dependent rect. 6 6
36 24.15 humidity 70.0 43200 > th dose independent rect. 3 1
41 24.16 temperature 15.0 1440 > th dose independent rect. 23 6
44 24.16 temperature 20.0 720 < th dose dependent sin 1 NA
48 24.18 precipitation 0.1 720 > th dose independent rect. 2 15
51 24.19 humidity 50.0 43200 > th dose independent rect. 1 4
61 24.22 precipitation 0.1 1440 < th dose independent rect. 6 4
62 24.22 humidity 50.0 43200 > th dose independent rect. 23 6
64 24.22 precipitation 0.1 1440 < th dose dependent rect. 6 4
67 24.25 atmosphere 1015.0 1440 < th dose independent rect. 3 1
87 24.28 temperature 15.0 4320 > th dose independent rect. 10 7
92 24.29 temperature 15.0 1440 > th dose independent rect. 7 3
93 24.29 temperature 15.0 4320 > th dose independent rect. 10 5
95 24.29 temperature 15.0 1440 > th dose independent rect. 23 8
97 24.29 temperature 20.0 720 < th dose dependent rect. 3 16
108 24.32 radiation 1.0 1440 > th dose independent rect. 8 1
115 24.33 temperature 15.0 720 > th dose independent rect. 3 18
122 24.35 humidity 50.0 43200 > th dose independent rect. 23 8
132 24.36 humidity 90.0 720 > th dose dependent rect. 8 7
133 24.36 humidity 90.0 720 > th dose dependent rect. 7 9
134 24.36 temperature 20.0 720 < th dose dependent rect. 5 12
137 24.37 radiation 1.0 1440 > th dose independent rect. 8 3
167 24.41 radiation 1.0 1440 < th dose independent rect. 8 1
169 24.41 radiation 1.0 1440 < th dose independent rect. 8 3
174 24.41 humidity 90.0 1440 > th dose dependent rect. 9 1
175 24.41 radiation 1.0 1440 < th dose dependent rect. 8 1
176 24.41 radiation 1.0 1440 < th dose dependent rect. 8 3
191 24.43 humidity 90.0 720 > th dose dependent rect. 9 5
205 24.44 temperature 20.0 720 < th dose dependent rect. 7 8
208 24.45 temperature 15.0 4320 < th dose independent rect. 4 1
210 24.45 temperature 15.0 720 > th dose independent rect. 1 23
213 24.46 humidity 90.0 1440 > th dose independent rect. 9 1
218 24.46 humidity 50.0 43200 < th dose dependent rect. 19 1
220 24.46 humidity 60.0 43200 < th dose dependent rect. 4 3
225 24.47 precipitation 0.1 720 > th dose independent rect. 10 3
226 24.47 atmosphere 1015.0 1440 < th dose independent rect. 24 7
227 24.47 wind 9.0 1440 > th dose independent rect. 22 12
232 24.47 precipitation 0.1 720 > th dose dependent rect. 10 3
233 24.47 temperature 20.0 720 < th dose dependent rect. 10 4
237 24.48 wind 9.0 1440 > th dose independent rect. 9 1
246 24.48 radiation 1.0 720 < th dose independent rect. 8 6
255 24.48 temperature 20.0 720 < th dose dependent rect. 11 2
260 24.48 radiation 1.0 720 < th dose dependent rect. 8 6
270 24.49 temperature 15.0 1440 > th dose independent rect. 10 21
281 24.49 temperature 20.0 720 < th dose dependent rect. 9 6
287 24.50 temperature 15.0 1440 > th dose independent rect. 10 3
312 24.51 humidity 90.0 1440 < th dose independent rect. 9 1
313 24.51 precipitation 0.1 1440 > th dose independent rect. 10 1
314 24.51 precipitation 0.1 1440 < th dose independent rect. 2 1
317 24.51 humidity 90.0 720 > th dose independent rect. 7 9
321 24.51 precipitation 0.1 1440 > th dose dependent rect. 10 1
322 24.51 precipitation 0.1 1440 < th dose dependent rect. 2 1
337 24.52 temperature 15.0 1440 > th dose independent sin 4 NA
339 24.52 temperature 20.0 720 < th dose independent rect. 11 2
346 24.52 temperature 20.0 720 < th dose independent rect. 10 5
360 24.52 temperature 20.0 1440 < th dose dependent rect. 9 1
369 24.53 humidity 70.0 43200 < th dose independent rect. 3 1
370 24.53 humidity 50.0 43200 < th dose independent rect. 5 1
374 24.53 temperature 15.0 1440 < th dose independent rect. 23 5
376 24.53 temperature 15.0 4320 > th dose independent rect. 12 6
378 24.53 humidity 90.0 720 > th dose independent rect. 8 7
379 24.53 atmosphere 1015.0 1440 < th dose independent rect. 3 7
382 24.53 temperature 15.0 720 < th dose independent rect. 4 15
398 24.54 atmosphere 1015.0 4320 > th dose independent rect. 18 1
423 24.54 atmosphere 1015.0 4320 > th dose dependent rect. 18 1
435 24.55 temperature 15.0 1440 < th dose independent sin 7 NA
436 24.55 temperature 15.0 1440 < th dose independent sin 5 NA
452 24.55 temperature 15.0 1440 < th dose independent rect. 23 7
468 24.55 temperature 15.0 1440 < th dose independent rect. 1 13
480 24.55 precipitation 0.1 720 > th dose independent rect. 17 23
490 24.55 temperature 15.0 4320 < th dose dependent rect. 6 5
495 24.56 temperature 15.0 720 > th dose independent sin 1 NA
497 24.56 temperature 15.0 1440 > th dose independent rect. 3 1
501 24.56 humidity 60.0 43200 < th dose independent rect. 23 1
544 24.56 temperature 15.0 720 < th dose independent rect. 2 19
547 24.56 wind 3.0 4320 < th dose dependent rect. 2 1
548 24.56 temperature 15.0 1440 < th dose dependent rect. 3 1
549 24.56 humidity 60.0 43200 < th dose dependent rect. 23 1
574 24.56 temperature 15.0 1440 < th dose dependent rect. 23 13
585 24.57 temperature 15.0 720 < th dose independent sin 1 NA
587 24.57 temperature 15.0 1440 < th dose independent rect. 24 1
632 24.57 temperature 15.0 1440 < th dose dependent sin 4 NA
653 24.57 precipitation 0.1 720 > th dose dependent rect. 1 19
656 24.58 precipitation 0.1 720 > th dose independent no NA NA
657 24.58 precipitation 0.1 720 < th dose independent no NA NA
660 24.58 humidity 50.0 43200 < th dose independent rect. 19 1
685 24.58 temperature 15.0 90 > th dose independent rect. 3 23
686 24.58 precipitation 0.1 720 > th dose independent rect. 9 23
687 24.58 precipitation 0.1 720 > th dose independent rect. 12 23
690 24.58 precipitation 0.1 720 < th dose dependent no NA NA
746 24.60 temperature 15.0 720 < th dose independent no NA NA
747 24.60 humidity 90.0 1440 > th dose independent rect. 11 1
757 24.60 temperature 15.0 720 < th dose independent rect. 19 10
761 24.60 temperature 15.0 720 < th dose independent rect. 18 12
784 24.60 temperature 15.0 720 < th dose independent rect. 9 21
786 24.60 temperature 15.0 720 < th dose independent rect. 17 21
792 24.60 temperature 15.0 720 < th dose independent rect. 13 22
808 24.60 temperature 15.0 4320 < th dose dependent rect. 6 1
830 24.61 temperature 15.0 720 < th dose independent sin 12 NA
856 24.61 temperature 15.0 720 < th dose independent rect. 4 23
896 24.61 atmosphere 1015.0 1440 > th dose dependent rect. 24 13
904 24.62 temperature 15.0 4320 > th dose independent rect. 7 1
912 24.62 temperature 15.0 720 < th dose independent rect. 20 8
943 24.62 temperature 15.0 720 < th dose dependent sin 8 NA
946 24.62 humidity 90.0 1440 > th dose dependent rect. 11 1
958 24.62 temperature 15.0 720 < th dose dependent rect. 21 14
963 24.62 temperature 15.0 720 < th dose dependent rect. 22 20