BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0264900 Os06g0264900|Os06g0264900
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0264900 Endonuclease/exonuclease/phosphatase domain co... 621 e-178
Os01g0610600 Endonuclease/exonuclease/phosphatase domain co... 192 2e-49
Os03g0166800 Endonuclease/exonuclease/phosphatase domain co... 98 7e-21
Os10g0412100 Endonuclease/exonuclease/phosphatase domain co... 96 2e-20
Os05g0389500 Endonuclease/exonuclease/phosphatase domain co... 94 2e-19
>Os06g0264900 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 300
Score = 621 bits (1602), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MASAAPRSRLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAPRDHRRRWQSPAAGSPG 60
MASAAPRSRLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAPRDHRRRWQSPAAGSPG
Sbjct: 1 MASAAPRSRLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAPRDHRRRWQSPAAGSPG 60
Query: 61 RVYQRHRAQQYGVPSRRWVLAEEASTSDGDACTIMSYNILADNNAHYHPDLYLDVPWDAM 120
RVYQRHRAQQYGVPSRRWVLAEEASTSDGDACTIMSYNILADNNAHYHPDLYLDVPWDAM
Sbjct: 61 RVYQRHRAQQYGVPSRRWVLAEEASTSDGDACTIMSYNILADNNAHYHPDLYLDVPWDAM 120
Query: 121 RWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRTGDAKDGCATFW 180
RWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRTGDAKDGCATFW
Sbjct: 121 RWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRTGDAKDGCATFW 180
Query: 181 KSKGLHLLEEDSIDFSEYNLRNNVAQIFVFELNRAQKLVVGNIHVLFNPKRGDVKLGQIR 240
KSKGLHLLEEDSIDFSEYNLRNNVAQIFVFELNRAQKLVVGNIHVLFNPKRGDVKLGQIR
Sbjct: 181 KSKGLHLLEEDSIDFSEYNLRNNVAQIFVFELNRAQKLVVGNIHVLFNPKRGDVKLGQIR 240
Query: 241 MLLEKANALAEKWGGIPIVLAGDFNSTPDLDISLHDRRQLSGLDSSEFALYDLCRSEPFS 300
MLLEKANALAEKWGGIPIVLAGDFNSTPDLDISLHDRRQLSGLDSSEFALYDLCRSEPFS
Sbjct: 241 MLLEKANALAEKWGGIPIVLAGDFNSTPDLDISLHDRRQLSGLDSSEFALYDLCRSEPFS 300
>Os01g0610600 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 903
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 147/258 (56%), Gaps = 22/258 (8%)
Query: 51 WQSPAAG-SPGRVYQRHRAQQYGVPSRRWVLAEEASTSDGDACTIMSYNILADNNAHYHP 109
++ P AG PG Q R +Y RRW + + ++SYNILAD A H
Sbjct: 153 FRPPYAGFRPGAPQQSPRLAEY---RRRWRFTQHRPPRQAERFKVLSYNILADYLAQEHQ 209
Query: 110 DLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRT 169
LY +P M W+ R+ ++ E W PD++CLQEVD+F D+ EM RGY +K RT
Sbjct: 210 FLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEVDKFTDLEQEMATRGYNGIWKMRT 269
Query: 170 GDAKDGCATFWKSKGLHLLEEDSIDFSEYNLRNNVAQIFVFEL---------------NR 214
G+A DGCA FW++ L ++ I+F++ +LR+NVAQI V E +
Sbjct: 270 GNATDGCAIFWRTARFQLRYQEDIEFNKIDLRDNVAQICVLESVIPGNVQTESSPNHPQQ 329
Query: 215 AQKLVVGNIHVLFNPKRGDVKLGQIRMLLEKANALAEKWGGIPIVLAGDFNSTPD---LD 271
A++++V N HVL+NPKRGD+KLGQ+R LL++ AL++ W P+++ GDFNSTP +
Sbjct: 330 AKQIIVCNTHVLYNPKRGDIKLGQVRTLLDRVYALSKTWNDAPVIICGDFNSTPKSPLYN 389
Query: 272 ISLHDRRQLSGLDSSEFA 289
L + LSGL S +
Sbjct: 390 FMLEQKLNLSGLVKSNIS 407
>Os03g0166800 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 607
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 43/216 (19%)
Query: 93 TIMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEV--DRFR 150
T++SYNILAD A D Y P A+ W RR+ ++REI + D++CLQEV + F
Sbjct: 257 TVLSYNILADTYAT--SDTYSYCPTWALSWPYRRQNLLREIIGYHADIICLQEVQSNHFE 314
Query: 151 D-IATEMENRGYQSRFKGRTGD-------AKDGCATFWKSKGLHLLEEDSIDFSEYN--- 199
+ A E++ GYQ+ FK RT + + DGCATF++ +++ ++F++
Sbjct: 315 EFFAPELDKHGYQALFKKRTTEVYTGNLQSIDGCATFFRRDKFSHVKKYEVEFNKAAQSL 374
Query: 200 -----------------LRNNVAQIFVFEL----------NRAQKLVVGNIHVLFNPKRG 232
+++N+A I V E ++ Q L V N H+ +
Sbjct: 375 TDAIIPAAQRKVALTRLIKDNIALIAVLEAKFGSHGADNPSKRQLLCVANTHINVHQDLK 434
Query: 233 DVKLGQIRMLLEKANALAEKWGGIPIVLAGDFNSTP 268
DVKL Q+ LL+ +A IP+++ GDFN+TP
Sbjct: 435 DVKLWQVNTLLKGLEKIAVS-ADIPMLVCGDFNATP 469
>Os10g0412100 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 605
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 43/216 (19%)
Query: 93 TIMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEV--DRFR 150
+++SYNILAD A+ D Y P A+ W RR+ ++REI + D++CLQEV + F
Sbjct: 255 SVLSYNILAD--AYATSDAYSYCPTWALSWTYRRQNLMREIIGYHADIICLQEVQLNHFE 312
Query: 151 D-IATEMENRGYQSRFKGRTGD-------AKDGCATFWKSKGLHLLEEDSIDFSEYN--- 199
D + E++ GYQ+ +K RT + A DGCATF++ +++ ++F++
Sbjct: 313 DFFSPELDKHGYQALYKKRTTEVYTGAPHAIDGCATFFRRDKFSHVKKYEVEFNKAAQSL 372
Query: 200 -----------------LRNNVAQIFVFELN----------RAQKLVVGNIHVLFNPKRG 232
+++NVA I V E + Q L V N HV +
Sbjct: 373 TDAIIPSTQRRVALSRLIKDNVALIAVLEAKFGNHGTDNPGKRQLLCVANTHVNVHQDLK 432
Query: 233 DVKLGQIRMLLEKANALAEKWGGIPIVLAGDFNSTP 268
DVKL +++ LL+ +A IP+++ GDFNS P
Sbjct: 433 DVKLWEVQTLLKGLEKIAVS-ADIPMLVCGDFNSVP 467
>Os05g0389500 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 389
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 52/225 (23%)
Query: 94 IMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIA 153
++SYNILA + + P ++W +R + ++ E++ ++ DL+C+QE+D +
Sbjct: 66 LVSYNILA--QVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQELDEYDTFY 123
Query: 154 TE-MENRGYQSRFKGRTGDAKDGCATFWKSKGLHLLEEDSIDFSE--------------- 197
+ MEN GY S + R+GD +DGC F+K K + L++++ + +++
Sbjct: 124 KKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYNDLVEKYVHTDHVNSDT 183
Query: 198 --------------------------YNL-RNNVAQIFVFELNRA--QKLVVGNIHVLFN 228
+ L R+ V + F+LN L++ N H+ ++
Sbjct: 184 SNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANTHIYWD 243
Query: 229 PKRGDVKLGQIRMLLEKANA----LAEKWGGIP-IVLAGDFNSTP 268
P+ DVKL Q + +L + ++ K+ P +++AGDFNSTP
Sbjct: 244 PEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTP 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,066,225
Number of extensions: 577774
Number of successful extensions: 2780
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2771
Number of HSP's successfully gapped: 5
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)