Os01g0610600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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Os01g0610600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.66 | 0.372 | 7.48 | -0.343 | 0.0485 | 0.431 | 0.599 | -0.175 | -0.269 | 18.7 | 12.47 | 20 | -- | -- |
| 62.74 | 0.369 | 7.48 | -0.344 | 0.0396 | 0.438 | 0.658 | -- | -0.269 | 19.3 | 12.5 | 21 | -- | -- |
| 63.5 | 0.371 | 7.48 | -0.333 | 0.0637 | 0.418 | -- | -0.26 | -0.265 | 16.9 | 12.47 | 20 | -- | -- |
| 63.85 | 0.372 | 7.48 | -0.348 | 0.0585 | 0.403 | -- | -- | -0.264 | 15.8 | 12.51 | 21 | -- | -- |
| 63.67 | 0.372 | 7.48 | -0.354 | -- | 0.426 | -- | -0.25 | -0.266 | -- | 12.51 | 20 | -- | -- |
| 68.67 | 0.388 | 7.47 | -0.311 | 0.441 | -- | -0.138 | -- | -0.238 | 12.6 | -- | -- | -- | -- |
| 68.75 | 0.388 | 7.47 | -0.316 | 0.441 | -- | -- | -- | -0.238 | 12.7 | -- | -- | -- | -- |
| 64.02 | 0.373 | 7.48 | -0.356 | -- | 0.427 | -- | -- | -0.269 | -- | 12.48 | 21 | -- | -- |
| 67.07 | 0.381 | 7.47 | -- | 0.0828 | 0.386 | -- | -- | -0.227 | 14.8 | 12.57 | 21 | -- | -- |
| 80.93 | 0.42 | 7.47 | -0.332 | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
| 71.38 | 0.395 | 7.46 | -- | 0.446 | -- | -- | -- | -0.203 | 12.8 | -- | -- | -- | -- |
| 67.16 | 0.382 | 7.47 | -- | -- | 0.41 | -- | -- | -0.225 | -- | 9.85 | 24 | -- | -- |
| 83.84 | 0.427 | 7.47 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.61 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 2 | 57.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 3 | 57.88 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 5 | 58.07 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 8 | 58.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 11 | 58.38 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 14 | 58.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 17 | 58.57 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 19 | 58.67 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 23 | 58.73 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 39 | 58.95 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 55 | 59.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 71 | 59.37 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 97 | 59.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 102 | 59.64 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 103 | 59.64 | temperature | 30.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 107 | 59.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 111 | 59.67 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 114 | 59.70 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 123 | 59.74 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 124 | 59.74 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 144 | 59.82 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 147 | 59.84 | temperature | 30.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 155 | 59.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 157 | 59.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 174 | 59.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 184 | 59.98 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 195 | 60.03 | temperature | 10.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 204 | 60.05 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 207 | 60.06 | temperature | 10.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 210 | 60.07 | temperature | 25.0 | 270 | < th | dose independent | sin | 7 | NA |
| 211 | 60.07 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 243 | 60.17 | radiation | 10.0 | 270 | > th | dose independent | sin | 9 | NA |
| 256 | 60.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 260 | 60.20 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 271 | 60.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 274 | 60.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 275 | 60.21 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 276 | 60.21 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 280 | 60.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 311 | 60.28 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 353 | 60.37 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 365 | 60.39 | radiation | 10.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 368 | 60.40 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 405 | 60.48 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 411 | 60.49 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 413 | 60.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 11 |
| 426 | 60.52 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 455 | 60.57 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 6 |
| 459 | 60.57 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 469 | 60.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 18 |
| 471 | 60.59 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 475 | 60.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 485 | 60.61 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 494 | 60.63 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 518 | 60.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 561 | 60.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 563 | 60.68 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 569 | 60.69 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 576 | 60.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 579 | 60.71 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 18 |
| 580 | 60.71 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 588 | 60.71 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 14 |
| 609 | 60.76 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 643 | 60.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 671 | 60.86 | humidity | 60.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 672 | 60.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 675 | 60.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 695 | 60.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 700 | 60.90 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 701 | 60.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 703 | 60.90 | temperature | 25.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 708 | 60.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 716 | 60.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 23 |
| 723 | 60.92 | radiation | 20.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 731 | 60.93 | radiation | 10.0 | 30 | > th | dose independent | sin | 3 | NA |
| 746 | 60.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 19 |
| 752 | 60.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 769 | 60.98 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 783 | 60.99 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 797 | 61.00 | humidity | 60.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 803 | 61.00 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 808 | 61.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 813 | 61.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 850 | 61.08 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 851 | 61.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 853 | 61.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 895 | 61.12 | wind | 7.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 896 | 61.12 | humidity | 70.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 923 | 61.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 960 | 61.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 16 |
| 968 | 61.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 16 |