Os05g0389500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endonuclease/exonuclease/phosphatase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0389500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Endonuclease/exonuclease/phosphatase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.6 | 0.26 | 9.27 | -0.413 | 0.358 | 0.883 | -0.673 | 0.832 | -0.381 | 23.1 | 9.869 | 442 | -- | -- |
| 31.08 | 0.26 | 9.29 | -0.549 | 0.36 | 0.909 | -0.663 | -- | -0.42 | 23.3 | 7.589 | 437 | -- | -- |
| 32.39 | 0.265 | 9.27 | -0.375 | 0.411 | 0.886 | -- | 0.898 | -0.373 | 23.3 | 9.441 | 352 | -- | -- |
| 32.81 | 0.267 | 9.29 | -0.521 | 0.368 | 0.9 | -- | -- | -0.414 | 23.1 | 7.654 | 429 | -- | -- |
| 38.19 | 0.288 | 9.28 | -0.48 | -- | 1.01 | -- | 0.37 | -0.416 | -- | 15.87 | 625 | -- | -- |
| 40.93 | 0.3 | 9.27 | -0.341 | 0.488 | -- | -0.511 | -- | -0.283 | 21.4 | -- | -- | -- | -- |
| 41.83 | 0.303 | 9.27 | -0.321 | 0.494 | -- | -- | -- | -0.282 | 21.1 | -- | -- | -- | -- |
| 38.18 | 0.288 | 9.29 | -0.572 | -- | 0.996 | -- | -- | -0.442 | -- | 16.2 | 645 | -- | -- |
| 39.19 | 0.292 | 9.27 | -- | 0.389 | 0.657 | -- | -- | -0.326 | 22.4 | 8.076 | 425 | -- | -- |
| 55.92 | 0.349 | 9.25 | -0.32 | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
| 44.55 | 0.312 | 9.26 | -- | 0.494 | -- | -- | -- | -0.246 | 21.1 | -- | -- | -- | -- |
| 45.98 | 0.316 | 9.27 | -- | -- | 0.783 | -- | -- | -0.358 | -- | 16.7 | 613 | -- | -- |
| 58.61 | 0.357 | 9.24 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.38 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 3 | 27.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 42 | 29.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 17 |
| 58 | 29.31 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 59 | 29.33 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 23 |
| 67 | 29.38 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 107 | 29.65 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 171 | 30.00 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 177 | 30.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 184 | 30.07 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 191 | 30.09 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 237 | 30.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 252 | 30.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 266 | 30.37 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 272 | 30.38 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 280 | 30.41 | temperature | 10.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 292 | 30.44 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 295 | 30.44 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 313 | 30.49 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 320 | 30.50 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 327 | 30.52 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 336 | 30.55 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 356 | 30.60 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 408 | 30.74 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 21 |
| 420 | 30.76 | wind | 7.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 468 | 30.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 19 |
| 477 | 30.92 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 502 | 30.96 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 506 | 30.96 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 508 | 30.97 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 543 | 31.03 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 552 | 31.05 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 586 | 31.11 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 628 | 31.21 | wind | 7.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 629 | 31.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 642 | 31.23 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 651 | 31.24 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 659 | 31.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 661 | 31.25 | temperature | 20.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 668 | 31.26 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 743 | 31.37 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 760 | 31.39 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 768 | 31.40 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 770 | 31.40 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 778 | 31.41 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 791 | 31.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 19 |
| 796 | 31.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 833 | 31.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 5 |
| 836 | 31.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 837 | 31.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 839 | 31.51 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 841 | 31.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 850 | 31.52 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 877 | 31.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 900 | 31.58 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 11 | 16 |
| 924 | 31.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 940 | 31.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 974 | 31.65 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 991 | 31.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 996 | 31.67 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 17 |