BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0389500 Os05g0389500|AK098939
(389 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0389500 Endonuclease/exonuclease/phosphatase domain co... 757 0.0
Os10g0412100 Endonuclease/exonuclease/phosphatase domain co... 100 1e-21
Os03g0166800 Endonuclease/exonuclease/phosphatase domain co... 100 2e-21
Os01g0610600 Endonuclease/exonuclease/phosphatase domain co... 100 3e-21
Os06g0264900 Endonuclease/exonuclease/phosphatase domain co... 82 5e-16
>Os05g0389500 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 389
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/389 (94%), Positives = 367/389 (94%)
Query: 1 MLKLQAXXXXXXXXXXXXXXXXXXXXXXFVPICKRRMSTQAQPSFAPLPTAQSESDAGAA 60
MLKLQA FVPICKRRMSTQAQPSFAPLPTAQSESDAGAA
Sbjct: 1 MLKLQASLPLFRLRPRPSSPPPCGPRLPFVPICKRRMSTQAQPSFAPLPTAQSESDAGAA 60
Query: 61 GYQFRLVSYNILAQVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQELDEYD 120
GYQFRLVSYNILAQVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQELDEYD
Sbjct: 61 GYQFRLVSYNILAQVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQELDEYD 120
Query: 121 TFYKKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYNDLVEKYVHTDHVN 180
TFYKKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYNDLVEKYVHTDHVN
Sbjct: 121 TFYKKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYNDLVEKYVHTDHVN 180
Query: 181 SDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANTHI 240
SDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANTHI
Sbjct: 181 SDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANTHI 240
Query: 241 YWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLVSAN 300
YWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLVSAN
Sbjct: 241 YWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLVSAN 300
Query: 301 SDSTDEAPIKLRSLYAANGGEPEFTNCTPGFTGTLDYIFLSDGSSVKPTSLLRIPRGDSA 360
SDSTDEAPIKLRSLYAANGGEPEFTNCTPGFTGTLDYIFLSDGSSVKPTSLLRIPRGDSA
Sbjct: 301 SDSTDEAPIKLRSLYAANGGEPEFTNCTPGFTGTLDYIFLSDGSSVKPTSLLRIPRGDSA 360
Query: 361 EVQGGLPNFHHPSDHLPIGADFQVLGSEG 389
EVQGGLPNFHHPSDHLPIGADFQVLGSEG
Sbjct: 361 EVQGGLPNFHHPSDHLPIGADFQVLGSEG 389
>Os10g0412100 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 605
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 91/378 (24%)
Query: 64 FRLVSYNILAQVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQE--LDEYDT 121
F ++SYNILA Y S + + P+ L W R + ++ E+ + AD++C+QE L+ ++
Sbjct: 254 FSVLSYNILADAYATSDAYSYCPTWALSWTYRRQNLMREIIGYHADIICLQEVQLNHFED 313
Query: 122 FYKKNMENSGYSSIYIQRSGD-------KRDGCGIFYKPKSMELVQKEVLHYNDLVEKYV 174
F+ ++ GY ++Y +R+ + DGC F++ V+K + +N +
Sbjct: 314 FFSPELDKHGYQALYKKRTTEVYTGAPHAIDGCATFFRRDKFSHVKKYEVEFNKAAQSL- 372
Query: 175 HTDHVNSDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKL--------N 226
TD + T + + RL +D V L+A + N
Sbjct: 373 -TDAIIPSTQRRVALS--------------------RLIKDNVALIAVLEAKFGNHGTDN 411
Query: 227 DPCDHILIMANTHIYWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNS 286
+L +ANTH+ + DVKL + + +L EK+ + +++ GDFNS
Sbjct: 412 PGKRQLLCVANTHVNVHQDLKDVKLWEVQTLLK---GLEKI---AVSADIPMLVCGDFNS 465
Query: 287 TPGDKVYNYLVSANSDS-------------------TDEAP-IKLRSLYAANGG------ 320
PG + L D T + P + S +A G
Sbjct: 466 VPGSSPHGLLAMGKVDQLHPDLAIDPLGILRPASKLTHQLPLVSAYSSFARMVGVGYDLE 525
Query: 321 -----------EPEFTNCTPGFTGTLDYIFLS----DGSSVKPTSLLRIPRGDSAEVQGG 365
EP FTNCT FTGT+DYIF + S+ R D+A
Sbjct: 526 HQRRRMDPATNEPLFTNCTRDFTGTVDYIFYTADSLSVESLLELLDEESLRKDTA----- 580
Query: 366 LPNFHHPSDHLPIGADFQ 383
LP+ SDH+ + A+F+
Sbjct: 581 LPSPEWSSDHIALLAEFR 598
>Os03g0166800 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 607
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 156/378 (41%), Gaps = 91/378 (24%)
Query: 64 FRLVSYNILAQVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQEL--DEYDT 121
F ++SYNILA Y S + + P+ L W R + +L E+ + AD++C+QE+ + ++
Sbjct: 256 FTVLSYNILADTYATSDTYSYCPTWALSWPYRRQNLLREIIGYHADIICLQEVQSNHFEE 315
Query: 122 FYKKNMENSGYSSIYIQRSGD-------KRDGCGIFYKPKSMELVQKEVLHYNDLVEKYV 174
F+ ++ GY +++ +R+ + DGC F++ V+K + +N +
Sbjct: 316 FFAPELDKHGYQALFKKRTTEVYTGNLQSIDGCATFFRRDKFSHVKKYEVEFNKAAQSL- 374
Query: 175 HTDHVNSDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKL--------N 226
TD + A +KV RL +D + L+A + N
Sbjct: 375 -TDAI----------IPAAQRKVALT----------RLIKDNIALIAVLEAKFGSHGADN 413
Query: 227 DPCDHILIMANTHIYWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNS 286
+L +ANTHI + DVKL Q +L EK+ + +++ GDFN+
Sbjct: 414 PSKRQLLCVANTHINVHQDLKDVKLWQVNTLLK---GLEKI---AVSADIPMLVCGDFNA 467
Query: 287 TPGDKVYNYLVSANSD-------------------STDEAP-IKLRSLYAANGG------ 320
TPG + L D T + P + S +A G
Sbjct: 468 TPGSTPHGLLAMGKVDLMHPDLAIDPLGILRPASKLTHQLPLVSAYSSFARMVGAGYDLE 527
Query: 321 -----------EPEFTNCTPGFTGTLDYIFLS----DGSSVKPTSLLRIPRGDSAEVQGG 365
EP FTNCT FTGT+DYIF + S+ R D+A
Sbjct: 528 HQRRRMDPATNEPLFTNCTRDFTGTIDYIFYTADSLSVESLLELLDEDSLRKDTA----- 582
Query: 366 LPNFHHPSDHLPIGADFQ 383
LP+ SDH+ + A+F+
Sbjct: 583 LPSPEWSSDHIALLAEFR 600
>Os01g0610600 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 903
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 41/239 (17%)
Query: 63 QFRLVSYNILAQVYVKSAFFPHS--PSACLKWKTRSKAVLSELKSFEADLMCIQELDEYD 120
+F+++SYNILA + F + PS + W R + ++ E + D++C+QE+D++
Sbjct: 191 RFKVLSYNILADYLAQEHQFLYERIPSFIMDWNWRKEKLVFEFGLWSPDILCLQEVDKF- 249
Query: 121 TFYKKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYN--DLVEKYVHTDH 178
T ++ M GY+ I+ R+G+ DGC IF++ +L +E + +N DL +
Sbjct: 250 TDLEQEMATRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDIEFNKIDLRDNVAQICV 309
Query: 179 VNSDTSNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANT 238
+ S N TE + PN P+ + +I+ NT
Sbjct: 310 LESVIPGNVQ-TESS-----------PNHPQQAKQ-------------------IIVCNT 338
Query: 239 HIYWDPEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLV 297
H+ ++P+ D+KL Q + +L RV +S +N P V+I GDFNSTP +YN+++
Sbjct: 339 HVLYNPKRGDIKLGQVRTLLDRV----YALSKTWNDAP-VIICGDFNSTPKSPLYNFML 392
>Os06g0264900 Endonuclease/exonuclease/phosphatase domain containing protein
Length = 300
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 52/225 (23%)
Query: 66 LVSYNILA--QVYVKSAFFPHSPSACLKWKTRSKAVLSELKSFEADLMCIQELDEYDTFY 123
++SYNILA + + P ++W +R + ++ E++ ++ DL+C+QE+D +
Sbjct: 94 IMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIA 153
Query: 124 KKNMENSGYSSIYIQRSGDKRDGCGIFYKPKSMELVQKEVLHYNDLVEKYVHTDHVNSDT 183
+ MEN GY S + R+GD +DGC F+K K + L++++ + +++
Sbjct: 154 TE-MENRGYQSRFKGRTGDAKDGCATFWKSKGLHLLEEDSIDFSE--------------- 197
Query: 184 SNNSSPTEEASKKVDNNKHGDPNDPRFRLKRDCVGLLAAFKLNDPCDHILIMANTHIYWD 243
+ L R+ V + F+LN L++ N H+ ++
Sbjct: 198 --------------------------YNL-RNNVAQIFVFELNRA--QKLVVGNIHVLFN 228
Query: 244 PEWIDVKLAQAKYILSRVTQFEKLISNKFNCKPSVMIAGDFNSTP 288
P+ DVKL Q + +L + ++ K+ P +++AGDFNSTP
Sbjct: 229 PKRGDVKLGQIRMLLEKANA----LAEKWGGIP-IVLAGDFNSTP 268
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,098,673
Number of extensions: 557472
Number of successful extensions: 1422
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1415
Number of HSP's successfully gapped: 5
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)