BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0264900 Os06g0264900|Os06g0264900
(300 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73875.1 | chr1:27781112-27784571 FORWARD LENGTH=455 222 2e-58
AT3G18500.3 | chr3:6352544-6355297 FORWARD LENGTH=450 211 4e-55
AT5G11350.1 | chr5:3621583-3625412 FORWARD LENGTH=755 192 2e-49
AT3G58580.1 | chr3:21660866-21663697 REVERSE LENGTH=604 100 2e-21
AT3G58560.1 | chr3:21650880-21653896 REVERSE LENGTH=603 96 2e-20
AT1G31500.4 | chr1:11273821-11276534 REVERSE LENGTH=418 78 7e-15
>AT1G73875.1 | chr1:27781112-27784571 FORWARD LENGTH=455
Length = 454
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 145/232 (62%), Gaps = 25/232 (10%)
Query: 76 RRWVLAEEASTSDGDACTIMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRH 135
R WV + + D ++SYN+L +NA H DLY +VP + W R+ LI +EI
Sbjct: 84 REWVFSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISR 143
Query: 136 WDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRTGDAKDGCATFWKSKGLHLLEEDSIDF 195
++ ++CLQEVDRF D+ ++NRG++ K RTG+A DGCA FWK LL+ I+F
Sbjct: 144 YNASILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQHIEF 203
Query: 196 SEYNLRNNVAQIFVFELNRAQ--------------KLVVGNIHVLFNPKRGDVKLGQIRM 241
++ +RNNVAQ+ V E+N + +LVVGNIHVLFNPKRGD+KLGQ+R+
Sbjct: 204 DKFGMRNNVAQLCVLEMNCEEDPKSKLRVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRL 263
Query: 242 LLEKANALAEKWGGIPIVLAGDFNSTP-----------DLDISLHDRRQLSG 282
LEKA L+++WG IP+ +AGD NSTP DLD LHDRRQ+SG
Sbjct: 264 FLEKAYKLSQEWGNIPVAIAGDLNSTPQSAIYDFIASADLDTQLHDRRQISG 315
>AT3G18500.3 | chr3:6352544-6355297 FORWARD LENGTH=450
Length = 449
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 152/223 (68%), Gaps = 15/223 (6%)
Query: 75 SRRWVLAEEASTSDG-DACTIMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREI 133
+R W+ ++ S + T++SYNIL D N+ YH +LY +V ++W R+RLI E+
Sbjct: 91 ARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEEL 150
Query: 134 RHWDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRTGDAKDGCATFWKSKGLHLLEEDSI 193
+PD++ +QEVD++ D+ + ME GY +K RTGD DGCA FWK+ +LE ++I
Sbjct: 151 IRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRFGVLERENI 210
Query: 194 DFSEYNLRNNVAQIFVFEL---NRAQKLVVGNIHVLFNPKRGDVKLGQIRMLLEKANALA 250
+FS++ +R+NVAQ+ V EL N+++K+++GNIHVL+NP +GDVKLGQ+R L KA+ L+
Sbjct: 211 EFSQFGMRDNVAQLAVLELRKSNKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLS 270
Query: 251 EKWGGIPIVLAGDFNSTP-----------DLDISLHDRRQLSG 282
+KWG IPIVL GDFNSTP +L++ HD+++LSG
Sbjct: 271 KKWGDIPIVLCGDFNSTPKSPLYNFLASSELNVMEHDKKELSG 313
>AT5G11350.1 | chr5:3621583-3625412 FORWARD LENGTH=755
Length = 754
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 154/267 (57%), Gaps = 29/267 (10%)
Query: 51 WQSPAAGSPGRVYQRHRAQQYGVPSRRWVLAEEASTSDGDACTIMSYNILADNNAHYH-P 109
+Q+ + P + R R + R W A+ + + ++SYNILAD A+ H
Sbjct: 142 YQNQMSRPPPQQSFRQRPRSKPSDYREWEYAKTPPSPGSEKFVVLSYNILADYLANDHWR 201
Query: 110 DLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIATEMENRGYQSRFKGRT 169
LY +P + + W R+ ++ E+ W D++CLQEVD+F+D+ EM++RGY + +K RT
Sbjct: 202 SLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRT 261
Query: 170 GDAKDGCATFWKSKGLHLLEEDSIDFSEYNLRNNVAQIFVFEL----------------- 212
G+A DGCA FW+S L+ E+SI F++ LR+NVAQI V E
Sbjct: 262 GNAVDGCAIFWRSNRFKLVHEESIQFNQLGLRDNVAQICVLETLLTSHTKENETPPPESS 321
Query: 213 NRAQKLVVGNIHVLFNPKRGDVKLGQIRMLLEKANALAEKWGGIPIVLAGDFNSTP---- 268
+ ++V+ NIHVLFNPKRGD KLGQ+R LL+KA+A+++ W PIVL GDFN TP
Sbjct: 322 AGSHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDAPIVLCGDFNCTPKSPL 381
Query: 269 -------DLDISLHDRRQLSGLDSSEF 288
LD+S R ++SG S+EF
Sbjct: 382 YNFISDRKLDLSGLARDKVSGQVSAEF 408
>AT3G58580.1 | chr3:21660866-21663697 REVERSE LENGTH=604
Length = 603
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 43/229 (18%)
Query: 80 LAEEASTSDGDACTIMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRHWDPD 139
L ++A + T++SYNIL+D +A DLY P A+ W RR+ ++REI + D
Sbjct: 239 LDQDARIQSAGSFTVLSYNILSDTSAS--SDLYSYCPPWALSWPYRRQNLLREIVGYRAD 296
Query: 140 LVCLQEV--DRFRDI-ATEMENRGYQSRFKGRTGD-------AKDGCATFWKSKGLHLLE 189
+VCLQEV D F +I A E++ GYQ+ +K +T + A DGCATF++ ++
Sbjct: 297 VVCLQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVK 356
Query: 190 EDSIDFSEYN--------------------LRNNVAQIFVFELN----------RAQKLV 219
+ ++F++ +++N+A I V E + Q +
Sbjct: 357 KYDVEFNKAAQSLTDALIPQAQKRTALNRLVKDNIALIVVLEAKFGNQPTDPSGKRQLIC 416
Query: 220 VGNIHVLFNPKRGDVKLGQIRMLLEKANALAEKWGGIPIVLAGDFNSTP 268
V N HV DVKL Q+ LL+ +A IP+++ GDFN+ P
Sbjct: 417 VANTHVNVQQDLKDVKLWQVHTLLKGLEKIAAS-ADIPMLVCGDFNTLP 464
>AT3G58560.1 | chr3:21650880-21653896 REVERSE LENGTH=603
Length = 602
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 43/216 (19%)
Query: 93 TIMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEV--DRFR 150
T++SYNIL+D A D+Y P A+ W RR+ ++REI + D+VCLQEV D F
Sbjct: 249 TVLSYNILSDTYAS--SDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFE 306
Query: 151 D-IATEMENRGYQSRFKGRTGDA-------KDGCATFWK--------------SKGLHLL 188
+ E++ GYQ FK +T + DGCATF++ +K L
Sbjct: 307 EFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSL 366
Query: 189 EEDSIDFSEYN------LRNNVAQIFVFELN----------RAQKLVVGNIHVLFNPKRG 232
E I S+ +++NVA I V E + Q L V N HV +
Sbjct: 367 TEAIIPVSQKKNALNRLVKDNVALIVVLEAKFGSQAADNPGKRQLLCVANTHVNVPHELK 426
Query: 233 DVKLGQIRMLLEKANALAEKWGGIPIVLAGDFNSTP 268
DVKL Q+ LL+ +A IP+++ GDFN+ P
Sbjct: 427 DVKLWQVHTLLKGLEKIAAS-ADIPMLVCGDFNTVP 461
>AT1G31500.4 | chr1:11273821-11276534 REVERSE LENGTH=418
Length = 417
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 49/222 (22%)
Query: 94 IMSYNILADNNAHYHPDLYLDVPWDAMRWDSRRRLIIREIRHWDPDLVCLQEVDRFRDIA 153
++SYNILA + L P ++W +R I+ +++ D CLQEVD +
Sbjct: 94 LVSYNILA--QVYVKSALLPHSPPACLKWKARSHAILSVLKNLQADFFCLQEVDEYDSFY 151
Query: 154 -TEMENRGYQSRFKGRTGDAK-DGCATFWKSKGLHL--------------LEEDSIDFSE 197
M++ GY + RTG K DGCA F+K L ++ DS+ SE
Sbjct: 152 RNNMDSLGYSGIYIQRTGQRKRDGCAIFYKPSCAELVTKERIEYNDLVDSIKADSVSCSE 211
Query: 198 YNL------------------------RNNVAQIFVFELNRAQK--LVVGNIHVLFNPKR 231
+ R+ V + F +N+ + ++V N H+ ++P+
Sbjct: 212 QKIETSNEGKDSRKDSRDLNDPLVRLKRDCVGIMAAFRINKPFQHIVIVANTHLYWDPEL 271
Query: 232 GDVKLGQIRMLLEK----ANALAEKWGGIP-IVLAGDFNSTP 268
DVKL Q + LL + +++++ P ++LAGDFNS P
Sbjct: 272 ADVKLAQAKYLLSRLAQFKTLISDEFECTPSLLLAGDFNSIP 313
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,185,200
Number of extensions: 319110
Number of successful extensions: 901
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 6
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)