Os10g0203000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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Os10g0203000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Endonuclease/exonuclease/phosphatase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.57 | 0.288 | 11.8 | -0.565 | 0.742 | 0.435 | -0.355 | -0.128 | -0.14 | 8.83 | 27.8 | 252 | -- | -- |
| 37.59 | 0.286 | 11.8 | -0.585 | 0.742 | 0.429 | -0.365 | -- | -0.147 | 8.81 | 27.7 | 252 | -- | -- |
| 37.99 | 0.287 | 11.8 | -0.569 | 0.745 | 0.432 | -- | -0.18 | -0.138 | 8.83 | 27.79 | 252 | -- | -- |
| 38.03 | 0.287 | 11.8 | -0.599 | 0.75 | 0.419 | -- | -- | -0.147 | 8.81 | 27.72 | 245 | -- | -- |
| 59.43 | 0.359 | 11.8 | -0.45 | -- | 0.766 | -- | -0.339 | -0.0521 | -- | 27.5 | 499 | -- | -- |
| 44.4 | 0.312 | 11.8 | -0.693 | 0.9 | -- | -0.25 | -- | -0.206 | 7.68 | -- | -- | -- | -- |
| 44.57 | 0.313 | 11.8 | -0.7 | 0.9 | -- | -- | -- | -0.206 | 7.67 | -- | -- | -- | -- |
| 59.47 | 0.359 | 11.8 | -0.516 | -- | 0.768 | -- | -- | -0.0721 | -- | 27.58 | 486 | -- | -- |
| 47.03 | 0.319 | 11.8 | -- | 0.711 | 0.525 | -- | -- | -0.0616 | 9.24 | 27.7 | 259 | -- | -- |
| 88.15 | 0.439 | 11.8 | -0.688 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 57.47 | 0.355 | 11.8 | -- | 0.894 | -- | -- | -- | -0.128 | 7.73 | -- | -- | -- | -- |
| 66.27 | 0.379 | 11.8 | -- | -- | 0.82 | -- | -- | -0.0102 | -- | 27.4 | 499 | -- | -- |
| 100.62 | 0.468 | 11.8 | -- | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 14 |
| 3 | 36.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 9 | 36.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 10 | 36.27 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 16 | 36.37 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 6 |
| 42 | 36.85 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 63 | 37.07 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 76 | 37.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 86 | 37.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 91 | 37.31 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 14 |
| 94 | 37.33 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 8 |
| 106 | 37.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 211 | 37.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 217 | 37.94 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 12 |
| 263 | 38.07 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 320 | 38.22 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 326 | 38.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 390 | 38.38 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 392 | 38.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 414 | 38.43 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 465 | 38.53 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 10 |
| 470 | 38.54 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 537 | 38.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 543 | 38.68 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 5 |
| 571 | 38.72 | humidity | 80 | 10 | < th | dose independent | rect. | 21 | 15 |
| 591 | 38.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 644 | 38.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 691 | 38.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 703 | 38.88 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 12 |
| 709 | 38.89 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 5 |
| 794 | 38.97 | temperature | 30 | 10 | < th | dose independent | rect. | 8 | 4 |
| 837 | 39.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 859 | 39.04 | temperature | 30 | 10 | < th | dose independent | rect. | 8 | 6 |