BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0203000 Os10g0203000|AK100514
(471 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54130.2 | chr5:21962900-21965279 FORWARD LENGTH=437 560 e-160
AT1G02270.1 | chr1:443301-446197 REVERSE LENGTH=485 528 e-150
AT1G73875.1 | chr1:27781112-27784571 FORWARD LENGTH=455 62 7e-10
AT5G11350.1 | chr5:3621583-3625412 FORWARD LENGTH=755 59 5e-09
AT3G18500.3 | chr3:6352544-6355297 FORWARD LENGTH=450 58 1e-08
>AT5G54130.2 | chr5:21962900-21965279 FORWARD LENGTH=437
Length = 436
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 280/424 (66%), Positives = 330/424 (77%), Gaps = 19/424 (4%)
Query: 44 CVSCTTFNILAPIYKRMD--SENCRESQYRAYWFSRNEKIIDRLLADCSSIICLQEVWLG 101
C+SCTTFNILAPIYKR+ ++ RES RAYW RN +IID LL + SSIICLQE W+G
Sbjct: 25 CISCTTFNILAPIYKRLSHKDQSLRESDNRAYWLGRNHRIIDWLLYERSSIICLQEFWVG 84
Query: 102 NDELVDMYEKRLGDANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYRELLFNDFGDRVAQ 161
N+ELV++YEKRLGDA Y +KL RTNNRGDGLLTAV+K+YF V+N R+LLFND GDRVAQ
Sbjct: 85 NEELVNLYEKRLGDAGYLSYKLGRTNNRGDGLLTAVHKDYFRVVNSRDLLFNDCGDRVAQ 144
Query: 162 LLHVESAMPFWQNRSSSCIQQQSLIVNTHLLFPHDHSLSIVRLKQVYKILQYIEAYQEEH 221
LLHVE P+ Q + Q+ LIVNTHLLFPHD +LSIVRL+QVYKILQY+E+YQ+E
Sbjct: 145 LLHVELVPPYSQYDA----HQEVLIVNTHLLFPHDSTLSIVRLQQVYKILQYVESYQKEV 200
Query: 222 KLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDTAHQYSDSEEDAHKWVSHRNHRGNI 281
L PMPIILCGDWNGSKRG VYKFLRSQGFVSSYDTAH+Y+DS DAHKWVSHRNHRGNI
Sbjct: 201 NLSPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHRYTDS--DAHKWVSHRNHRGNI 258
Query: 282 CGVDFIWLLNPNKSRKPLKTSWNEAVFGIIKYLLLQVASLSEENAFALLKADSPDDQITY 341
C VDFIWLLNPN+ RK LKTSW+EAVFG+ +YLL + ASL+ E+AFA LK D+ D IT+
Sbjct: 259 CAVDFIWLLNPNRYRKLLKTSWSEAVFGMFRYLLRR-ASLTAEDAFAFLKTDNDGDHITF 317
Query: 342 SSFCQALCQLGMV-HPDRLNSEEIKDLWSEADHDGDDIVDYKEFQRCIWSPTCCSQXXXX 400
FC+ L QL + H + L ++EIKDLW++AD DG+ ++DYKEFQ+ IW+ T Q
Sbjct: 318 MGFCETLRQLNLTGHCNGLTTKEIKDLWTQADIDGNGLLDYKEFQQRIWNQTWSEQRDAE 377
Query: 401 XXXXXXXXGSLVTFEANDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLTVVFSPVR 460
++ GF+VK AVLFPPEVEKGMWPENYSLSDHA LTVVFSP+R
Sbjct: 378 DGEAKGN---------QEQTVGFSVKNAVLFPPEVEKGMWPENYSLSDHARLTVVFSPIR 428
Query: 461 MPCS 464
MPCS
Sbjct: 429 MPCS 432
>AT1G02270.1 | chr1:443301-446197 REVERSE LENGTH=485
Length = 484
Score = 528 bits (1360), Expect = e-150, Method: Compositional matrix adjust.
Identities = 261/426 (61%), Positives = 325/426 (76%), Gaps = 12/426 (2%)
Query: 42 ERCVSCTTFNILAPIYKRMDSEN--CRESQYRAYWFSRNEKIIDRLLADCSSIICLQEVW 99
E +SCTTFNILAPIYKR+D +N RES +R W +RN++I+D LL SS+ICLQEVW
Sbjct: 68 ESNISCTTFNILAPIYKRVDQKNHSTRESDFRTLWLARNQRILDLLLHQRSSVICLQEVW 127
Query: 100 LGNDELVDMYEKRLGDANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYRELLFNDFGDRV 159
+GN+ELV+MY +L + Y++++LARTN+RGDGLLTA++K++F V+NYRELLFNDFGDRV
Sbjct: 128 VGNEELVNMYHHQLSSSGYTIYQLARTNSRGDGLLTAIHKDHFKVVNYRELLFNDFGDRV 187
Query: 160 AQLLHVESAMPFWQNRSSSCIQQQSLIVNTHLLFPHDHSLSIVRLKQVYKILQYIEAYQE 219
AQLLHV++ +PF N +QQ+ +IVNTHLLFPHD SLSIVRL QVYKIL+Y+EAYQ+
Sbjct: 188 AQLLHVKTVIPFPLNGKQD-VQQEVIIVNTHLLFPHDSSLSIVRLHQVYKILEYLEAYQK 246
Query: 220 EHKLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDTAHQYSDSEEDAHKWVSHRNHRG 279
E+KL MPIILCGDWNGSKRG VYKFLRSQGF+SSYD AHQY+DS DAH+WVSHRNHRG
Sbjct: 247 ENKLNHMPIILCGDWNGSKRGHVYKFLRSQGFISSYDDAHQYTDS--DAHRWVSHRNHRG 304
Query: 280 NICGVDFIWLLNPNKSRKPLKTSWNEAVFGIIKYLLLQVASLSEENAFALLKADSPDDQI 339
NICGVDFIWL NP+ SRKPL+TSW EAVF IIKY L + AS++E++AF L A + D +
Sbjct: 305 NICGVDFIWLCNPSDSRKPLRTSWVEAVFSIIKYQLHK-ASIAEDDAFTFLGAKNHSDSL 363
Query: 340 TYSSFCQALCQLGMVH-PDRLNSEEIKDLWSEADHDGDDIVDYKEFQRCIWSPTCCSQXX 398
TYS FC AL ++ + P L+ EE K+LW AD DG+ + DY+E ++ IW+ T +Q
Sbjct: 364 TYSDFCLALQKVNLTGIPHGLSFEETKELWVRADLDGNGVFDYEELKK-IWNMTMVNQPG 422
Query: 399 XXXXXXXXXXGSLVTFEANDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLTVVFSP 458
E DEA G V +A+LFP E EKG+WPENY++SDHA LTV FSP
Sbjct: 423 NCKESVMESKKE----EGEDEAIGLKVNKAILFPQEAEKGLWPENYNISDHACLTVQFSP 478
Query: 459 VRMPCS 464
V+M CS
Sbjct: 479 VKMLCS 484
>AT1G73875.1 | chr1:27781112-27784571 FORWARD LENGTH=455
Length = 454
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 14/209 (6%)
Query: 74 WFSRNEKIIDRLLADCSSIICLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGL 133
W R I + +SI+CLQEV + D + L + + +RT DG
Sbjct: 130 WSRRKHLICKEISRYNASILCLQEV-----DRFDDLDVLLKNRGFRGVHKSRTGEASDGC 184
Query: 134 LTAVNKNYFHVLNYRELLFNDFGDR--VAQLLHVE---SAMPFWQNRSSSCIQQQSLIVN 188
+N F +L+++ + F+ FG R VAQL +E P + R S ++ ++ N
Sbjct: 185 AIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPKSKLRVRSSDPRRLVVGN 244
Query: 189 THLLFPHDHSLSIVRLKQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRS 248
H+LF + ++L QV L+ +AY+ + G +P+ + GD N + + +Y F+ S
Sbjct: 245 IHVLF--NPKRGDIKLGQVRLFLE--KAYKLSQEWGNIPVAIAGDLNSTPQSAIYDFIAS 300
Query: 249 QGFVSSYDTAHQYSDSEEDAHKWVSHRNH 277
+ Q S E K S RNH
Sbjct: 301 ADLDTQLHDRRQISGQTEVEPKERSFRNH 329
>AT5G11350.1 | chr5:3621583-3625412 FORWARD LENGTH=755
Length = 754
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 74 WFSRNEKIIDRLLADCSSIICLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGL 133
W R K++ L + I+CLQEV D+ D+ E+ + YS RT N DG
Sbjct: 214 WGWRKSKLVFELSLWSADIMCLQEV----DKFQDL-EEEMKHRGYSAIWKMRTGNAVDGC 268
Query: 134 LTAVNKNYFHVLNYRELLFNDFG--DRVAQLLHVESAMPFWQNRS------SSCIQQQSL 185
N F +++ + FN G D VAQ+ +E+ + + SS + +
Sbjct: 269 AIFWRSNRFKLVHEESIQFNQLGLRDNVAQICVLETLLTSHTKENETPPPESSAGSHRVV 328
Query: 186 IVNTHLLFPHDHSLSIVRLKQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVYKF 245
I N H+LF + +L QV +L +A+ PI+LCGD+N + + +Y F
Sbjct: 329 ICNIHVLF--NPKRGDFKLGQVRTLLD--KAHAVSKLWDDAPIVLCGDFNCTPKSPLYNF 384
Query: 246 L 246
+
Sbjct: 385 I 385
>AT3G18500.3 | chr3:6352544-6355297 FORWARD LENGTH=450
Length = 449
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 19/177 (10%)
Query: 74 WFSRNEKIIDRLLADCSSIICLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGL 133
W R I + L+ II +QEV D+ D++ + A Y+ RT + DG
Sbjct: 139 WGYRKRLICEELIRLNPDIISMQEV----DKYFDLFSM-MEKAGYAGSYKRRTGDNVDGC 193
Query: 134 LTAVNKNYFHVLNYRELLFNDFG--DRVAQLLHVESAMPFWQNRSSSCIQQQSLIVNTHL 191
+ F VL + F+ FG D VAQL +E N+S ++ L+ N H+
Sbjct: 194 AMFWKADRFGVLERENIEFSQFGMRDNVAQLAVLELRK---SNKS-----RKILLGNIHV 245
Query: 192 LFPHDHSLSIVRLKQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRS 248
L+ + + V+L QV + +A+ K G +PI+LCGD+N + + +Y FL S
Sbjct: 246 LY--NPNQGDVKLGQVRSLCS--KAHLLSKKWGDIPIVLCGDFNSTPKSPLYNFLAS 298
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,327,334
Number of extensions: 440945
Number of successful extensions: 1193
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 5
Length of query: 471
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 369
Effective length of database: 8,310,137
Effective search space: 3066440553
Effective search space used: 3066440553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)