BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0203000 Os10g0203000|AK100514
         (471 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0203000  Endonuclease/exonuclease/phosphatase domain co...   890   0.0  
Os01g0610600  Endonuclease/exonuclease/phosphatase domain co...    68   2e-11

>Os10g0203000 Endonuclease/exonuclease/phosphatase domain containing protein
          Length = 471

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/438 (97%), Positives = 426/438 (97%)

Query: 34  PLLLQPRDERCVSCTTFNILAPIYKRMDSENCRESQYRAYWFSRNEKIIDRLLADCSSII 93
           PLLLQPRDERCVSCTTFNILAPIYKRMDSENCRESQYRAYWFSRNEKIIDRLLADCSSII
Sbjct: 34  PLLLQPRDERCVSCTTFNILAPIYKRMDSENCRESQYRAYWFSRNEKIIDRLLADCSSII 93

Query: 94  CLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYRELLFN 153
           CLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYRELLFN
Sbjct: 94  CLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYRELLFN 153

Query: 154 DFGDRVAQLLHVESAMPFWQNRSSSCIQQQSLIVNTHLLFPHDHSLSIVRLKQVYKILQY 213
           DFGDRVAQLLHVESAMPFWQNRSSSCIQQQSLIVNTHLLFPHDHSLSIVRLKQVYKILQY
Sbjct: 154 DFGDRVAQLLHVESAMPFWQNRSSSCIQQQSLIVNTHLLFPHDHSLSIVRLKQVYKILQY 213

Query: 214 IEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDTAHQYSDSEEDAHKWVS 273
           IEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDTAHQYSDSEEDAHKWVS
Sbjct: 214 IEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRSQGFVSSYDTAHQYSDSEEDAHKWVS 273

Query: 274 HRNHRGNICGVDFIWLLNPNKSRKPLKTSWNEAVFGIIKYLLLQVASLSEENAFALLKAD 333
           HRNHRGNICGVDFIWLLNPNKSRKPLKTSWNEAVFGIIKYLLLQVASLSEENAFALLKAD
Sbjct: 274 HRNHRGNICGVDFIWLLNPNKSRKPLKTSWNEAVFGIIKYLLLQVASLSEENAFALLKAD 333

Query: 334 SPDDQITYSSFCQALCQLGMVHPDRLNSEEIKDLWSEADHDGDDIVDYKEFQRCIWSPTC 393
           SPDDQITYSSFCQALCQLGMVHPDRLNSEEIKDLWSEADHDGDDIVDYKEFQRCIWSPTC
Sbjct: 334 SPDDQITYSSFCQALCQLGMVHPDRLNSEEIKDLWSEADHDGDDIVDYKEFQRCIWSPTC 393

Query: 394 CSQXXXXXXXXXXXXGSLVTFEANDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLT 453
           CSQ            GSLVTFEANDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLT
Sbjct: 394 CSQEEEDDTEIDISDGSLVTFEANDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLT 453

Query: 454 VVFSPVRMPCSPRTPRTP 471
           VVFSPVRMPCSPRTPRTP
Sbjct: 454 VVFSPVRMPCSPRTPRTP 471



>Os01g0610600 Endonuclease/exonuclease/phosphatase domain containing protein
          Length = 903

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 35/246 (14%)

Query: 39  PRDERCVSCTTFNILAP--------IYKRMDSENCRESQYRAYWFSRNEKIIDRLLADCS 90
           PR        ++NILA         +Y+R+ S       +   W  R EK++        
Sbjct: 186 PRQAERFKVLSYNILADYLAQEHQFLYERIPS-------FIMDWNWRKEKLVFEFGLWSP 238

Query: 91  SIICLQEVWLGNDELVDMYEKRLGDANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYREL 150
            I+CLQEV    D+  D+ E+ +    Y+     RT N  DG         F +    ++
Sbjct: 239 DILCLQEV----DKFTDL-EQEMATRGYNGIWKMRTGNATDGCAIFWRTARFQLRYQEDI 293

Query: 151 LFN--DFGDRVAQLLHVESAMPF-WQNRSSSCIQQQS---LIVNTHLLFPHDHSLSIVRL 204
            FN  D  D VAQ+  +ES +P   Q  SS    QQ+   ++ NTH+L+  +     ++L
Sbjct: 294 EFNKIDLRDNVAQICVLESVIPGNVQTESSPNHPQQAKQIIVCNTHVLY--NPKRGDIKL 351

Query: 205 KQVYKILQYIEAYQEEHKLGPMPIILCGDWNGSKRGQVYKFLRSQ-----GFVSSYDTAH 259
            QV  +L  +  Y         P+I+CGD+N + +  +Y F+  Q     G V S  +  
Sbjct: 352 GQVRTLLDRV--YALSKTWNDAPVIICGDFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQ 409

Query: 260 QYSDSE 265
           Q S ++
Sbjct: 410 QTSTAQ 415



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,736,234
Number of extensions: 646346
Number of successful extensions: 1596
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1596
Number of HSP's successfully gapped: 2
Length of query: 471
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 367
Effective length of database: 11,605,545
Effective search space: 4259235015
Effective search space used: 4259235015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)