BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0582600 Os01g0582600|J023150F24
(500 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0582600 Conserved hypothetical protein 698 0.0
Os05g0593000 Conserved hypothetical protein 469 e-132
AK120510 316 2e-86
Os05g0184901 Sigma factor, regions 3 and 4 domain containin... 297 1e-80
Os05g0183900 296 3e-80
Os01g0186900 Conserved hypothetical protein 234 1e-61
AK120573 223 2e-58
Os05g0184666 137 2e-32
Os01g0838900 Trp repressor/replication initiator domain con... 111 1e-24
Os11g0702700 Homeodomain-like containing protein 106 3e-23
Os07g0175100 Homeodomain-like containing protein 103 3e-22
>Os01g0582600 Conserved hypothetical protein
Length = 500
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/434 (80%), Positives = 351/434 (80%)
Query: 67 PAASRKDXXXXXXXXXXXRKRSIAKILTSLAALEAEEHXXXXXXXXXXXXELALLESNAD 126
PAASRKD RKRSIAKILTSLAALEAEEH ELALLESNAD
Sbjct: 67 PAASRKDGPGGDGEGGNGRKRSIAKILTSLAALEAEEHSDRAGAADASRRELALLESNAD 126
Query: 127 HKSQAMMDYYAKMEGSFDAAAESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 186
HKSQAMMDYYAKMEGSFDAAAESD
Sbjct: 127 HKSQAMMDYYAKMEGSFDAAAESDATARSKRSRLAASATTAAVVATEEGAAETASASASP 186
Query: 187 XXXXXXXXXXHHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSA 246
HHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSA
Sbjct: 187 SRASGGGGAGHHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSA 246
Query: 247 VAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVL 306
VAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVL
Sbjct: 247 VAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVL 306
Query: 307 MPRFLQWPDXXXXXXXXXXXXXXYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQ 366
MPRFLQWPD YGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQ
Sbjct: 307 MPRFLQWPDEAAAAAFKERFQAAYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQ 366
Query: 367 KTSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMMHSACLVGGASY 426
KTSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMMHSACLVGGASY
Sbjct: 367 KTSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMMHSACLVGGASY 426
Query: 427 PLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACLRSEAAKRARDNIA 486
PLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACLRSEAAKRARDNIA
Sbjct: 427 PLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACLRSEAAKRARDNIA 486
Query: 487 HNLLHRGFAGTTFF 500
HNLLHRGFAGTTFF
Sbjct: 487 HNLLHRGFAGTTFF 500
>Os05g0593000 Conserved hypothetical protein
Length = 423
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/356 (64%), Positives = 256/356 (71%), Gaps = 52/356 (14%)
Query: 197 HHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRA 256
H QRRLWVKDRSRAWW+ C+S DYPE +FRRAFRM R TF +C+AL +AVAKEDT LRA
Sbjct: 68 HQQRRLWVKDRSRAWWELCSSADYPEADFRRAFRMSRPTFHFLCDALAAAVAKEDTALRA 127
Query: 257 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDX 316
AIPVRQRVAVC+WRLATGEPLR+VSKRFGLGISTCHKL+LEVCAAI+++LMPRFL WPD
Sbjct: 128 AIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLILEVCAAIRNLLMPRFLHWPDH 187
Query: 317 XXXXXXXXXXXXXYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQG 376
GVPGV+GAMYTTHIPIIAPK+SVAAY NRRHTERN KTSYSITLQG
Sbjct: 188 PTSTAYKTRFEATSGVPGVVGAMYTTHIPIIAPKVSVAAYLNRRHTERNHKTSYSITLQG 247
Query: 377 VVGPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMMHSACLVGGASYPLMDWVLVPY 436
VVGPDG FTDVCIGWPGSM D+QVL KS LHQRA+A + +VGGASYPL +W+LVPY
Sbjct: 248 VVGPDGTFTDVCIGWPGSMSDEQVLRKSALHQRASAAAGSMSWVVGGASYPLTEWMLVPY 307
Query: 437 THQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACL----------------------- 473
+NLTWTQHAFNEKVG++RRVA +AF RLK RWACL
Sbjct: 308 AQRNLTWTQHAFNEKVGEVRRVATEAFVRLKGRWACLQKRTEVKLQDLPAVLAACCVLHN 367
Query: 474 -----------------------------RSEAAKRARDNIAHNLLHRGFAGTTFF 500
+SE+A + RD+IAHNLLHRG AGT FF
Sbjct: 368 ICETRGEDMDPDLRCDLPPDEEEDDTVLVQSESANKVRDDIAHNLLHRGLAGTAFF 423
>AK120510
Length = 632
Score = 316 bits (810), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/242 (70%), Positives = 171/242 (70%)
Query: 67 PAASRKDXXXXXXXXXXXRKRSIAKILTSLAALEAEEHXXXXXXXXXXXXELALLESNAD 126
PAASRKD RKRSIAKILTSLAALEAEEH ELALLESNAD
Sbjct: 67 PAASRKDGPGGDGEGGNGRKRSIAKILTSLAALEAEEHSDRAGAADASRRELALLESNAD 126
Query: 127 HKSQAMMDYYAKMEGSFDAAAESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 186
HKSQAMMDYYAKMEGSFDAAAESD
Sbjct: 127 HKSQAMMDYYAKMEGSFDAAAESDATARSKRSRLAASATTAAVVATEEGAAETASASASP 186
Query: 187 XXXXXXXXXXHHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSA 246
HHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSA
Sbjct: 187 SRASGGGGAGHHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSA 246
Query: 247 VAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVL 306
VAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSV
Sbjct: 247 VAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVP 306
Query: 307 MP 308
P
Sbjct: 307 SP 308
>Os05g0184901 Sigma factor, regions 3 and 4 domain containing protein
Length = 468
Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/254 (57%), Positives = 179/254 (70%), Gaps = 7/254 (2%)
Query: 200 RRLWVKDRSRAWWDKCNSPDY-PEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAAI 258
RR+WV++RS WWD+ P PE EFRRAFRM R FD +C+ L +AVAKEDT LRAAI
Sbjct: 105 RRVWVRERSTEWWDRMRDPAACPEAEFRRAFRMPRAVFDKLCDDLAAAVAKEDTTLRAAI 164
Query: 259 PVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDXXX 318
PV QRVAVC+WRLATG+PLR VS+RFGLGISTCH ++L+VCAAI +VL R ++WPD
Sbjct: 165 PVPQRVAVCLWRLATGDPLREVSRRFGLGISTCHSIILQVCAAITAVLT-RVVRWPDSHA 223
Query: 319 XXXXXXXXXXXYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVV 378
G+PGV+GA++T HIPI+AP+ + Y++RR T+RN K +YS+ +Q VV
Sbjct: 224 AAASRFQALS--GIPGVVGAVHTEHIPIVAPRENAGEYYDRRLTDRNNKATYSVAMQAVV 281
Query: 379 GPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMM---HSACLVGGASYPLMDWVLVP 435
DGAFTDVCIG PGS+ D VL KS L+ R AG++ LVGGASYPL W+LVP
Sbjct: 282 DADGAFTDVCIGHPGSLSDAAVLTKSALYARCEAGLLLGDDPQWLVGGASYPLTSWMLVP 341
Query: 436 YTHQNLTWTQHAFN 449
Y NLTW Q N
Sbjct: 342 YAQPNLTWAQERLN 355
>Os05g0183900
Length = 483
Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/290 (52%), Positives = 192/290 (66%), Gaps = 12/290 (4%)
Query: 200 RRLWVKDRSRAWWDKCNSPDY-PEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAAI 258
RR+WV++RS WWD+ P PE +FRRAFRM R FD +C+ L +AVAK DT LR+AI
Sbjct: 118 RRVWVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFDKLCDDLAAAVAKVDTTLRSAI 177
Query: 259 PVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDXXX 318
PV QRVAVC+WRLATG+PLR VS+RFGLGISTCH ++++VCAAI +VL+ R ++WPD
Sbjct: 178 PVPQRVAVCLWRLATGDPLREVSRRFGLGISTCHNIIVQVCAAITAVLLTRVVRWPDSHA 237
Query: 319 XXXXXXXXXXXYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVV 378
+PGV+GA++T H I+AP+ Y++ R T RN K +YS+ +Q VV
Sbjct: 238 AAASRFQALSW--IPGVVGAVHTEHFRIVAPREHAGKYYDHRLTGRNNKATYSVAMQAVV 295
Query: 379 GPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMM---------HSACLVGGASYPLM 429
DGAFTDVCIG PGS+ D +L KS L+ R AG++ LVGGASYPL
Sbjct: 296 DADGAFTDVCIGHPGSLSDAAILAKSALYARCEAGLLLGHDKLGWQQPLWLVGGASYPLT 355
Query: 430 DWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACLRSEAAK 479
W+LVPYT NLTW Q N +V D R AV AF RL+ARW CLR K
Sbjct: 356 SWMLVPYTQPNLTWAQDRLNARVADARAAAVGAFRRLRARWQCLRRAEVK 405
>Os01g0186900 Conserved hypothetical protein
Length = 302
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 129/157 (82%)
Query: 202 LWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAAIPVR 261
LWVK+R WWD +SPDYP+ EFR+AFRM + TF+++C+ L +AVAKEDTMLRAAIPVR
Sbjct: 102 LWVKERDSEWWDMVSSPDYPDSEFRKAFRMSKATFEVVCDELAAAVAKEDTMLRAAIPVR 161
Query: 262 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDXXXXXX 321
+RVAVC+WRLATGEPLRLVSKRFGLGISTCHKLVLEVCAA+K+++MP+ ++WP+
Sbjct: 162 KRVAVCVWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAALKAMVMPKVVRWPEAGDAAA 221
Query: 322 XXXXXXXXYGVPGVIGAMYTTHIPIIAPKISVAAYFN 358
G+ GV+GA+YTTHIPIIAPK +VA+Y+N
Sbjct: 222 IAAHFEAISGISGVVGAIYTTHIPIIAPKSNVASYYN 258
>AK120573
Length = 168
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/163 (63%), Positives = 128/163 (78%), Gaps = 1/163 (0%)
Query: 284 FGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDXXXXXXXXXXXXXXYGVPGVIGAMYTTH 343
FGLGISTCHKLVLEVCAA+K+++MP+ ++WP+ G+ GV+GA+YTTH
Sbjct: 1 FGLGISTCHKLVLEVCAALKAMVMPKVVRWPEAGDAAAIAAHFEAISGISGVVGAIYTTH 60
Query: 344 IPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEK 403
IPIIAPK +VA+Y+NRRHTERNQKTSYS+T+Q VV GAFTDVCIGWPGS D++VLEK
Sbjct: 61 IPIIAPKSNVASYYNRRHTERNQKTSYSMTVQCVVDSTGAFTDVCIGWPGSNSDEEVLEK 120
Query: 404 SMLH-QRAAAGMMHSACLVGGASYPLMDWVLVPYTHQNLTWTQ 445
S L+ R G++ +VGG S+PLMDW+LVPYTHQNLTW+Q
Sbjct: 121 SALYLHRGVPGLIQGQWVVGGGSFPLMDWMLVPYTHQNLTWSQ 163
>Os05g0184666
Length = 401
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 77/99 (77%), Gaps = 1/99 (1%)
Query: 200 RRLWVKDRSRAWWDKCNSP-DYPEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAAI 258
RR+WV++RS WWD+ P PE +FRRAFRM R FD +C+ L +AV KEDT LR AI
Sbjct: 114 RRVWVRERSTEWWDRMRDPVACPEADFRRAFRMPRAVFDKLCDDLAAAVTKEDTTLRTAI 173
Query: 259 PVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE 297
PV QRV VCIWRLATG+PLR VS+RFGLGISTCH ++++
Sbjct: 174 PVPQRVTVCIWRLATGDPLREVSRRFGLGISTCHNIIVQ 212
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 368 TSYSITLQGVVGPDGAFTDVCIGWPGSMPDDQVLEKSMLHQRAAAGMM---------HSA 418
T ++I +Q VV +GAFTDVCIG PGS+ D VL KS L+ R AG++
Sbjct: 205 TCHNIIVQAVVDDEGAFTDVCIGHPGSLSDAAVLAKSALYARCEAGLLLGHDKLGWQQPL 264
Query: 419 CLVGGASYPLMDWVLVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACLRSEAA 478
LVGGASYPL W+LVPYT N TW Q N V D R AV AF RL+ARW CLR
Sbjct: 265 WLVGGASYPLTSWMLVPYTQPNQTWAQDRLNAHVADARAAAVGAFRRLRARWQCLRRAEV 324
Query: 479 K 479
K
Sbjct: 325 K 325
>Os01g0838900 Trp repressor/replication initiator domain containing protein
Length = 396
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 119/276 (43%), Gaps = 29/276 (10%)
Query: 223 EEFRRAFRMGRETFDMICEALGSAVAKEDTMLR-------AAIPVRQRVAVCIWRLATGE 275
+ F F+M R+TFD +C + ++ R A + V +V V + RL TGE
Sbjct: 52 QNFESVFKMSRKTFDYLCSLISGDFTRKTQSFRNFRFGDKAILGVEDQVGVALLRLTTGE 111
Query: 276 PLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDXXXXXXXXXXXXXXYGVPGV 335
L + RFG+ S + + A++ L+WP G+P
Sbjct: 112 SLLSIGNRFGMNHSAISNITWKFIEALEE-RAANHLKWPTPEEMATVKSKFEKIQGLPNC 170
Query: 336 IGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVVGPDGAFTDVCIGWPGSM 395
GA+ TTHI + ++ + + + S+ LQ +V D F DV GWPGS+
Sbjct: 171 CGAIDTTHI------LMCSSAQPNSNVWLDGENRNSMVLQAIVDADMRFRDVVSGWPGSL 224
Query: 396 PDDQVLEKSMLHQRA---------------AAGMMHSACLVGGASYPLMDWVLVPYTHQN 440
D +L S ++ AG + ++G ASYPL+ W++ PY ++
Sbjct: 225 NDSCILRTSGFYRLCEKGARLDGQTELPGEPAGSVVRDYILGDASYPLLPWLMTPYREKD 284
Query: 441 LTWTQHAFNEKVGDLRRVAVDAFARLKARWACLRSE 476
L+ + FN++ V A A+LK RW L+ E
Sbjct: 285 LSPAKADFNKRHAATIMVVQGALAKLKERWQVLKGE 320
>Os11g0702700 Homeodomain-like containing protein
Length = 391
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 117/276 (42%), Gaps = 33/276 (11%)
Query: 223 EEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAA---------IPVRQRVAVCIWRLAT 273
+ F F+M R TF+ IC + +++ M+R++ + + RVAV + RL +
Sbjct: 57 QRFEFIFKMPRRTFNYIC-----GLVRDEMMVRSSSYTFLDGKVLSLEDRVAVALIRLNS 111
Query: 274 GEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDXXXXXXXXXXXXXXYGVP 333
G L V G+ ST + A++ L+WPD +G+P
Sbjct: 112 GGSLVTVGSAVGVNHSTVSLITWRFVEAMEE-RASHHLRWPDSSEVEKIKSMFEKIHGLP 170
Query: 334 GVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVVGPDGAFTDVCIGWPG 393
G + TTHI + H E+N YS+ LQ V+ PD F D+ GWPG
Sbjct: 171 NCCGVVDTTHITMCLSSAEPNCKVWLDH-EKN----YSMVLQAVISPDMRFMDIVTGWPG 225
Query: 394 SMPDDQVLEKSMLHQRAAAGMMHSAC-------------LVGGASYPLMDWVLVPYTHQN 440
SM + +L S L + G + ++G A YPL+ W+L PY ++
Sbjct: 226 SMKESSILHSSGLFKMCEKGARLNGSKMVVSDGSEIGEYIIGDAGYPLLPWLLTPYQEKD 285
Query: 441 LTWTQHAFNEKVGDLRRVAVDAFARLKARWACLRSE 476
L+ ++ FN++ VA A K W L E
Sbjct: 286 LSDSKLEFNKRHAAAITVAPSTLANFKDTWKFLHGE 321
>Os07g0175100 Homeodomain-like containing protein
Length = 436
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 125/281 (44%), Gaps = 35/281 (12%)
Query: 216 NSPDYPEEEFRRAFRMGRETFDMICEALGSAVAKEDTMLRAA----------IPVRQRVA 265
++P E FR FR R TFD IC ++ +ED + R + V ++VA
Sbjct: 96 SAPSDEGEAFRYFFRTSRRTFDYIC-----SIVREDLISRPPSGLINIEGRLLSVEKQVA 150
Query: 266 VCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKSVLMPRFLQWPDXXXXXXXXXX 325
+ + RLA+G+ V FG+G ST ++ +++ L WP
Sbjct: 151 IAMRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIESMEERAR-HHLVWPGQERMEQIKAR 209
Query: 326 XXXXYGVPGVIGAMYTTHIPIIAPKISVAAYFNRRHTERNQKTSYSITLQGVVGPDGAFT 385
G+P GA+ THI + P + + + + +YS+ LQG+V + F
Sbjct: 210 FEAESGLPNCCGAIDATHIIMTLPAVESSEDWC------DPAKNYSMFLQGIVDDEMRFI 263
Query: 386 DVCIGWPGSMPDDQVLEKSMLHQRAAAG------MMHSA-------CLVGGASYPLMDWV 432
D+ GWPGSM ++L+ S + AG +M SA +VG YPL+ W+
Sbjct: 264 DIVTGWPGSMMFSRLLKCSGFFKHCDAGTRLDGPVMVSAENGEIREYIVGNNCYPLLPWL 323
Query: 433 LVPYTHQNLTWTQHAFNEKVGDLRRVAVDAFARLKARWACL 473
+ PY ++L+ +FN + R + A +RLK W L
Sbjct: 324 MTPYEGESLSAPMASFNARQKAARTLGPRALSRLKGSWRIL 364
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,783,026
Number of extensions: 433289
Number of successful extensions: 1016
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 14
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)