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Os11g0702700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.06 (0.0242) R2 : 0.588
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.29 (0.103) R2dC : 1.38 R2C : -0.011
β3 : -1.86 (0.138) R2dE : 0.493 R2E : -0.86
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.401 (0.0513) R2dN8 : 0.077 R2N8 : 0.0757
σ : 0.454
deviance : 95.07
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_____
C
peak time of C : 1.86
E
wheather : temperature
threshold : 15.24
memory length : 269
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.3
open length of G : 6.72

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.77 0.44 7.03 0.549 2.33 -1.92 -0.215 1.74 -0.32 1.87 15.28 279 20 7
89.24 0.44 7.04 0.462 2.35 -1.9 0.554 -- -0.359 1.87 15.47 262 20.2 7.17
87.9 0.437 7.03 0.543 2.34 -1.93 -- 1.63 -0.321 1.87 15.22 278 20 7.05
90.15 0.442 7.04 0.444 2.35 -1.93 -- -- -0.344 1.91 15.26 284 20.1 6.93
135.94 0.543 7.04 0.258 -- 1.35 -- -0.5 -0.485 -- -2.237 895 15.6 6.37
128.65 0.532 7.06 0.298 1.16 -- 0.171 -- -0.461 1.79 -- -- -- --
128.76 0.531 7.06 0.293 1.16 -- -- -- -0.462 1.81 -- -- -- --
126.99 0.525 7.1 7e-04 -- 1.26 -- -- -0.619 -- -10.89 357 15.5 14.5
95.07 0.454 7.06 -- 2.29 -1.86 -- -- -0.401 1.86 15.24 269 20.3 6.72
209.83 0.677 7.05 0.34 -- -- -- -- -0.436 -- -- -- -- --
131.02 0.535 7.07 -- 1.16 -- -- -- -0.495 1.82 -- -- -- --
116.62 0.503 7.07 -- -- 1.16 -- -- -0.541 -- -71 223 16.2 15.6
212.88 0.681 7.05 -- -- -- -- -- -0.474 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.98 temperature 15.0 270 > th dose dependent rect. 20 7
70 99.94 temperature 30.0 90 < th dose dependent rect. 17 16
95 101.43 temperature 10.0 90 > th dose dependent rect. 9 19
99 101.63 radiation 20.0 90 < th dose dependent rect. 5 18
118 102.36 humidity 50.0 30 > th dose dependent rect. 5 17
119 102.37 radiation 20.0 10 < th dose dependent rect. 5 19
128 102.61 radiation 20.0 90 < th dose dependent rect. 3 23
130 102.65 radiation 30.0 270 < th dose dependent rect. 3 6
131 102.66 radiation 10.0 270 < th dose dependent rect. 3 16
133 102.70 temperature 20.0 270 > th dose independent rect. 21 6
156 103.23 temperature 25.0 270 > th dose independent rect. 22 4
173 103.75 radiation 20.0 270 < th dose independent rect. 3 6
177 103.84 temperature 20.0 10 > th dose independent rect. 22 7
179 103.86 radiation 10.0 270 < th dose dependent rect. 3 11
186 104.00 temperature 25.0 270 < th dose independent rect. 15 16
212 104.18 radiation 30.0 90 < th dose dependent rect. 5 6
214 104.19 wind 1.0 90 > th dose independent rect. 4 5
222 104.28 temperature 10.0 10 > th dose dependent rect. 11 18
224 104.31 radiation 20.0 90 < th dose dependent rect. 5 10
230 104.35 temperature 10.0 1440 > th dose independent rect. 6 4
233 104.35 atmosphere 995.0 1440 > th dose independent rect. 6 4
234 104.35 atmosphere 1015.0 1440 < th dose independent rect. 6 4
235 104.35 temperature 10.0 1440 > th dose independent rect. 10 20
247 104.43 radiation 10.0 90 < th dose dependent rect. 5 12
249 104.44 radiation 30.0 90 < th dose dependent rect. 5 4
257 104.51 humidity 70.0 10 > th dose independent rect. 5 17
277 104.68 wind 1.0 270 > th dose independent rect. 4 2
299 104.87 temperature 25.0 720 > th dose independent rect. 15 10
302 104.92 wind 1.0 270 > th dose independent rect. 3 17
319 105.09 radiation 10.0 270 < th dose dependent rect. 5 1
324 105.15 radiation 1.0 270 < th dose independent rect. 5 1
351 105.37 temperature 10.0 1440 > th dose independent rect. 23 7
354 105.37 temperature 30.0 1440 < th dose independent rect. 23 7
358 105.37 humidity 50.0 1440 > th dose independent rect. 23 7
367 105.37 atmosphere 995.0 1440 > th dose independent rect. 23 7
368 105.37 radiation 20.0 1440 < th dose independent rect. 23 7
377 105.37 radiation 1.0 270 > th dose independent rect. 7 9
378 105.37 temperature 10.0 1440 > th dose independent rect. 6 17
382 105.38 radiation 20.0 10 < th dose dependent rect. 5 21
393 105.48 radiation 10.0 90 < th dose independent rect. 5 18
412 105.65 radiation 40.0 10 < th dose dependent rect. 5 6
417 105.67 radiation 1.0 270 < th dose independent rect. 3 16
429 105.76 humidity 60.0 90 > th dose dependent rect. 5 6
437 105.80 radiation 10.0 90 < th dose dependent sin 22 NA
442 105.83 wind 1.0 270 > th dose independent rect. 2 6
464 105.98 radiation 20.0 90 < th dose independent rect. 5 4
469 106.01 humidity 70.0 270 > th dose independent rect. 3 5
494 106.09 humidity 50.0 30 > th dose dependent rect. 3 23
495 106.10 radiation 10.0 270 < th dose dependent sin 1 NA
503 106.15 temperature 30.0 270 < th dose dependent rect. 3 3
516 106.24 temperature 15.0 270 > th dose independent rect. 7 20
521 106.25 humidity 60.0 90 > th dose dependent rect. 5 10
522 106.26 temperature 25.0 720 < th dose independent rect. 15 10
529 106.31 humidity 60.0 90 > th dose dependent rect. 5 12
534 106.34 humidity 60.0 90 > th dose dependent rect. 5 4
536 106.35 precipitation 0.1 270 < th dose independent rect. 7 20
538 106.35 precipitation 0.1 270 < th dose dependent rect. 7 20
547 106.38 humidity 70.0 10 > th dose independent rect. 5 15
569 106.48 radiation 40.0 270 < th dose dependent rect. 15 16
572 106.51 wind 9.0 270 < th dose independent rect. 3 4
573 106.51 temperature 10.0 270 > th dose independent rect. 3 4
575 106.51 temperature 30.0 270 < th dose independent rect. 3 4
576 106.51 humidity 50.0 270 > th dose independent rect. 3 4
578 106.51 atmosphere 995.0 270 > th dose independent rect. 3 4
579 106.51 atmosphere 1015.0 270 < th dose independent rect. 3 4
585 106.52 humidity 50.0 270 > th dose dependent rect. 3 5
606 106.62 temperature 25.0 720 < th dose independent rect. 16 8
611 106.64 wind 9.0 270 < th dose independent rect. 7 20
624 106.70 radiation 20.0 270 < th dose independent rect. 16 15
650 106.77 wind 9.0 270 < th dose dependent rect. 20 7
663 106.86 temperature 20.0 90 > th dose independent rect. 9 20
678 106.91 precipitation 0.1 270 < th dose independent rect. 7 9
680 106.91 precipitation 0.1 270 < th dose dependent rect. 7 9
711 107.02 precipitation 0.1 270 < th dose independent rect. 6 23
713 107.02 precipitation 0.1 270 < th dose dependent rect. 6 23
733 107.10 radiation 20.0 10 < th dose independent rect. 5 5
737 107.12 atmosphere 1010.0 270 < th dose independent rect. 5 1
738 107.12 humidity 50.0 4320 > th dose independent rect. 6 4
747 107.16 humidity 50.0 270 > th dose independent rect. 15 16
755 107.18 precipitation 0.1 270 < th dose independent rect. 3 4
758 107.18 precipitation 0.1 270 < th dose dependent rect. 3 4
761 107.20 temperature 10.0 270 > th dose independent rect. 7 9
763 107.20 atmosphere 1015.0 270 < th dose independent rect. 7 9
764 107.20 radiation 1.0 90 > th dose independent rect. 9 9
765 107.20 temperature 10.0 270 > th dose independent rect. 16 15
770 107.21 radiation 10.0 10 < th dose independent rect. 5 19
804 107.32 atmosphere 1010.0 30 < th dose independent rect. 22 7
811 107.33 wind 9.0 270 < th dose independent rect. 16 15
836 107.38 wind 9.0 270 < th dose independent rect. 7 9
837 107.38 atmosphere 1015.0 270 < th dose independent rect. 7 20
842 107.40 humidity 70.0 90 > th dose independent rect. 5 4
849 107.44 atmosphere 1010.0 270 < th dose independent rect. 20 7
857 107.46 radiation 10.0 90 > th dose independent rect. 9 22
861 107.47 radiation 1.0 270 < th dose independent rect. 4 12
881 107.50 precipitation 0.1 270 < th dose independent rect. 20 7
883 107.50 precipitation 0.1 270 < th dose dependent rect. 20 7
884 107.51 radiation 10.0 90 > th dose independent sin 23 NA
888 107.52 humidity 70.0 270 > th dose independent rect. 2 7
890 107.52 wind 1.0 270 > th dose independent rect. 16 15
923 107.62 wind 7.0 270 < th dose independent rect. 5 1
925 107.62 temperature 10.0 270 > th dose independent rect. 5 1
927 107.62 temperature 30.0 270 < th dose independent rect. 5 1
928 107.62 humidity 50.0 270 > th dose independent rect. 5 1
931 107.62 atmosphere 995.0 270 > th dose independent rect. 5 1
933 107.62 radiation 20.0 270 < th dose independent rect. 5 1
939 107.62 atmosphere 995.0 270 > th dose independent rect. 7 20
940 107.62 temperature 10.0 270 > th dose independent rect. 6 23
964 107.68 atmosphere 995.0 270 > th dose independent rect. 7 9
982 107.73 temperature 25.0 720 > th dose independent sin 16 NA