BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0516600 Os01g0516600|AK065802
(113 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0516600 Similar to Stable protein 1 234 2e-62
Os01g0516400 Dimeric alpha-beta barrel domain containing pr... 111 1e-25
Os01g0516200 Dimeric alpha-beta barrel domain containing pr... 82 1e-16
Os11g0150400 Dimeric alpha-beta barrel domain containing pr... 76 6e-15
>Os01g0516600 Similar to Stable protein 1
Length = 113
Score = 234 bits (596), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MAAEAGSGGVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVSIENMH 60
MAAEAGSGGVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVSIENMH
Sbjct: 1 MAAEAGSGGVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVSIENMH 60
Query: 61 QGFTHVFESTFESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDYKPTIVNNS 113
QGFTHVFESTFESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDYKPTIVNNS
Sbjct: 61 QGFTHVFESTFESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDYKPTIVNNS 113
>Os01g0516400 Dimeric alpha-beta barrel domain containing protein
Length = 101
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 55/63 (87%)
Query: 51 GTDVSIENMHQGFTHVFESTFESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDYKPTIV 110
GTDVSIENMH GFTHVFE TFESTEGVKEYIEHPAH+EFA E L +EKTLIIDY PT V
Sbjct: 39 GTDVSIENMHHGFTHVFECTFESTEGVKEYIEHPAHLEFAKEILLAMEKTLIIDYMPTAV 98
Query: 111 NNS 113
NNS
Sbjct: 99 NNS 101
>Os01g0516200 Dimeric alpha-beta barrel domain containing protein
Length = 112
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%), Gaps = 3/53 (5%)
Query: 1 MAAE---AGSGGVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHW 50
MAAE AG GV+KHI+LARFKE+V PERLD LIRG+ GLV+LVPSMKAF+W
Sbjct: 1 MAAETPAAGRSGVLKHIVLARFKEEVTPERLDHLIRGFGGLVNLVPSMKAFNW 53
>Os11g0150400 Dimeric alpha-beta barrel domain containing protein
Length = 113
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Query: 9 GVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDV-SIENMHQGFTHVF 67
G VKH+ L +FKE+V +D +++G LV + +K+F WG DV + E + QGFTHVF
Sbjct: 2 GEVKHLCLVKFKEEVL---VDDILQGMTKLVSEMDMVKSFEWGKDVLNQEMLTQGFTHVF 58
Query: 68 ESTFESTEGVKEYIEHPAHVEFANEFLPVLEK 99
TF S+E + Y+ H H EFA F+ ++K
Sbjct: 59 SLTFASSEDLTTYMSHERHQEFAGTFMAAIDK 90
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,862,123
Number of extensions: 144831
Number of successful extensions: 426
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 4
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)