Os01g0516400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dimeric alpha-beta barrel domain containing protein.
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Os01g0516400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dimeric alpha-beta barrel domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.93 | 0.714 | 3.86 | -2.53 | 0.319 | 0.43 | 0.127 | 6.95 | -0.355 | 21.8 | 49.91 | 8595 | -- | -- |
| 287.07 | 0.789 | 4.06 | -2.17 | 0.359 | 0.547 | -0.36 | -- | -0.397 | 21 | 20.05 | 2864 | -- | -- |
| 230.82 | 0.708 | 3.86 | -2.54 | 0.314 | 0.437 | -- | 7.05 | -0.348 | 21.8 | 49.89 | 8629 | -- | -- |
| 286.11 | 0.788 | 4.05 | -2.12 | 0.345 | 0.537 | -- | -- | -0.378 | 21.8 | 20.03 | 2862 | -- | -- |
| 236.11 | 0.716 | 3.85 | -2.49 | -- | 0.337 | -- | 6.99 | -0.357 | -- | 49.81 | 8254 | -- | -- |
| 296.21 | 0.807 | 4.07 | -2.19 | 0.304 | -- | 0.0408 | -- | -0.499 | 21.3 | -- | -- | -- | -- |
| 296.21 | 0.806 | 4.07 | -2.19 | 0.304 | -- | -- | -- | -0.499 | 21.3 | -- | -- | -- | -- |
| 264.1 | 0.757 | 4.02 | -1.73 | -- | -1.45 | -- | -- | -0.328 | -- | 58.58 | 11125 | -- | -- |
| 402.01 | 0.934 | 3.96 | -- | 0.25 | 0.658 | -- | -- | -0.246 | 22.2 | 20 | 2821 | -- | -- |
| 301.59 | 0.811 | 4.06 | -2.19 | -- | -- | -- | -- | -0.501 | -- | -- | -- | -- | -- |
| 422.83 | 0.962 | 4.01 | -- | 0.307 | -- | -- | -- | -0.255 | 20.7 | -- | -- | -- | -- |
| 273.62 | 0.77 | 3.94 | -- | -- | -1.94 | -- | -- | 0.0561 | -- | 59.99 | 22627 | -- | -- |
| 428.16 | 0.966 | 4.01 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.95 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 2 | 220.22 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 3 | 220.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 221.86 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 7 | 222.11 | humidity | 70 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 17 | 222.43 | humidity | 70 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 27 | 222.54 | humidity | 70 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 38 | 223.25 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 40 | 223.48 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 41 | 223.49 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 43 | 223.52 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 92 | 224.76 | humidity | 50 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 94 | 224.95 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 97 | 225.07 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 20 |
| 99 | 225.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 140 | 225.92 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 146 | 226.15 | radiation | 10 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 153 | 226.29 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 170 | 226.35 | radiation | 30 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 206 | 227.39 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 207 | 227.42 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 210 | 227.43 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 241 | 227.65 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 260 | 227.90 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |
| 264 | 228.03 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 276 | 228.09 | wind | 9 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 280 | 228.18 | humidity | 50 | 43200 | < th | dose independent | sin | 9 | NA |
| 293 | 228.51 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 304 | 228.68 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 327 | 228.82 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 330 | 228.83 | humidity | 50 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 462 | 229.14 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 516 | 229.22 | radiation | 1 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 534 | 229.36 | radiation | 10 | 14400 | < th | dose dependent | sin | 14 | NA |
| 624 | 229.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 6 |
| 632 | 229.95 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 636 | 229.99 | radiation | 10 | 14400 | < th | dose dependent | rect. | 11 | 19 |
| 659 | 230.20 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 660 | 230.21 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 663 | 230.22 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 784 | 230.98 | radiation | 40 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 968 | 231.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 991 | 232.15 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 994 | 232.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 16 |