Os01g0516600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Stable protein 1.
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Os01g0516600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Stable protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.22 | 0.509 | 7.56 | -4.7 | 0.54 | -2.29 | -0.303 | -6.22 | 0.03 | 23 | 1.02 | 11507 | -- | -- |
| 166.53 | 0.601 | 7.44 | -3.51 | 0.639 | -1.41 | -0.525 | -- | 0.35 | 23.2 | 10.01 | 9937 | -- | -- |
| 115.52 | 0.501 | 7.56 | -4.51 | 0.562 | -2.4 | -- | -6.34 | 0.0105 | 23 | 0.8119 | 11480 | -- | -- |
| 148.17 | 0.567 | 7.37 | -3.37 | 0.429 | -1.4 | -- | -- | 0.369 | 22.5 | 2.55 | 13084 | -- | -- |
| 128.4 | 0.528 | 7.56 | -4.37 | -- | -2.6 | -- | -6.25 | 0.0779 | -- | 0.79 | 13158 | -- | -- |
| 209.45 | 0.678 | 7.49 | -3.72 | 0.479 | -- | -0.391 | -- | -0.0929 | 22.5 | -- | -- | -- | -- |
| 210.07 | 0.679 | 7.49 | -3.7 | 0.482 | -- | -- | -- | -0.0917 | 22.4 | -- | -- | -- | -- |
| 153.55 | 0.577 | 7.38 | -3.39 | -- | -1.41 | -- | -- | 0.363 | -- | 2.33 | 14646 | -- | -- |
| 127.4 | 0.526 | 7.19 | -- | 0.528 | -3.29 | -- | -- | 1.22 | 21.9 | 0.00502 | 47520 | -- | -- |
| 224.26 | 0.7 | 7.48 | -3.7 | -- | -- | -- | -- | -0.0899 | -- | -- | -- | -- | -- |
| 571.74 | 1.12 | 7.4 | -- | 0.465 | -- | -- | -- | 0.321 | 21.9 | -- | -- | -- | -- |
| 141.04 | 0.553 | 7.2 | -- | -- | -3.33 | -- | -- | 1.18 | -- | 0.0004495 | 46390 | -- | -- |
| 584.66 | 1.13 | 7.38 | -- | -- | -- | -- | -- | 0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.94 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 2 | 99.99 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 4 | 100.06 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 5 | 100.07 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 7 | 100.11 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 11 | 100.12 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 12 | 100.13 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 13 | 100.13 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 15 | 100.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 20 | 100.15 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 22 | 100.16 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 23 | 100.16 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 54 | 100.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 55 | 100.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 148 | 100.55 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 169 | 100.64 | temperature | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 177 | 100.66 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 182 | 100.68 | temperature | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 204 | 100.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 397 | 101.47 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 475 | 101.62 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 487 | 101.64 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 502 | 101.67 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 546 | 101.76 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 551 | 101.77 | temperature | 25 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 574 | 101.81 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 582 | 101.83 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 661 | 102.02 | temperature | 20 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 736 | 102.27 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 743 | 102.30 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 830 | 102.60 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 852 | 102.67 | temperature | 20 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 893 | 102.79 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 899 | 102.82 | temperature | 20 | 43200 | > th | dose independent | sin | 22 | NA |
| 981 | 103.10 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 1 |