BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0516600 Os01g0516600|AK065802
         (113 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17210.1  | chr3:5882318-5882896 FORWARD LENGTH=110            153   2e-38
AT5G22580.1  | chr5:7502709-7503137 FORWARD LENGTH=112             82   4e-17
AT2G31670.1  | chr2:13472699-13473490 REVERSE LENGTH=264           48   1e-06

>AT3G17210.1 | chr3:5882318-5882896 FORWARD LENGTH=110
          Length = 109

 Score =  153 bits (386), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/103 (67%), Positives = 86/103 (83%)

Query: 9   GVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVSIENMHQGFTHVFE 68
           G VKH+LLA FK+ V+PE++++LI+GYA LV+L+  MKAFHWG DVSIEN+HQG+TH+FE
Sbjct: 6   GPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFE 65

Query: 69  STFESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDYKPTIVN 111
           STFES E V EYI HPAHVEFA  FL  L+K L+IDYKPT V+
Sbjct: 66  STFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVS 108



>AT5G22580.1 | chr5:7502709-7503137 FORWARD LENGTH=112
          Length = 111

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 12  KHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVSIENM-HQGFTHVFEST 70
           KH+++ +FKED    ++D++++G   LV  + ++K+F WG D    +M  QGFTH F  T
Sbjct: 7   KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMT 63

Query: 71  FESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDYKPTIVNNS 113
           FE+ +G   +  HP HVEF+  F  V++K +++D+    V +S
Sbjct: 64  FENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSS 106



>AT2G31670.1 | chr2:13472699-13473490 REVERSE LENGTH=264
          Length = 263

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 1   MAAEAGSGGVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVSIENMH 60
           M++      +++HI+L + K+D    ++  +I     L  L    +  H    +S   +H
Sbjct: 39  MSSSTPQSQIIEHIVLFKTKDDADSTKITSMINNLNALAYL---DQVLH----ISTSPLH 91

Query: 61  Q-----GFTHVFESTFESTEGVKEYIEHPAHVEFANE-FLPVLEKTLIIDY 105
           +      FTHV  S +ES E +  Y  HP HV    E  LP+ +  + +D+
Sbjct: 92  RISSATAFTHVLHSRYESKEDLASYAAHPDHVRVVKESVLPICDDIMAVDW 142



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,473,561
Number of extensions: 94537
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 4
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)