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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0150400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Dimeric alpha-beta barrel domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.0371) R2 : 0.487
β1 : -1.98 (0.139) R2dD : 0.261 R2D : 0.0649
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.07 (0.169) R2dE : 0.467 R2E : 0.216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.433 (0.0849) R2dN8 : 0.0469 R2N8 : -0.0933
σ : 0.678
deviance : 212.23
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.5
memory length : 244
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.01 0.674 6.09 -2.15 0.276 -3.13 -0.902 0.661 -0.496 1.41 25.74 203 -- --
206.56 0.669 6.08 -2.04 0.281 -3.18 -0.753 -- -0.471 1.28 25.7 200 -- --
208.85 0.673 6.09 -2.13 0.336 -3.18 -- 0.552 -0.505 2.25 25.98 200 -- --
208.55 0.673 6.08 -2.02 0.32 -3.21 -- -- -0.483 2.39 25.9 203 -- --
212.27 0.679 6.07 -2.05 -- -3.02 -- 0.444 -0.443 -- 25.6 249 -- --
358.38 0.887 5.92 -1.21 0.336 -- 0.547 -- 0.209 15.8 -- -- -- --
358.89 0.887 5.92 -1.2 0.356 -- -- -- 0.212 16.7 -- -- -- --
212.23 0.678 6.07 -1.98 -- -3.07 -- -- -0.433 -- 25.5 244 -- --
304.89 0.813 6 -- 0.189 -2.42 -- -- -0.123 24 25.8 159 -- --
365.6 0.893 5.92 -1.21 -- -- -- -- 0.203 -- -- -- -- --
396.83 0.932 5.89 -- 0.378 -- -- -- 0.346 16.6 -- -- -- --
306 0.815 5.99 -- -- -2.32 -- -- -0.0832 -- 25.7 200 -- --
404.45 0.939 5.89 -- -- -- -- -- 0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.99 temperature 25 270 < th dose dependent rect. 6 23
10 209.71 temperature 25 270 < th dose dependent no NA NA
13 210.50 temperature 25 270 < th dose dependent rect. 15 23
14 210.63 temperature 25 270 < th dose dependent rect. 17 23
16 210.91 temperature 25 270 < th dose dependent rect. 20 23
18 210.93 temperature 25 270 < th dose dependent rect. 13 23
39 214.49 temperature 25 270 < th dose dependent rect. 24 23
42 214.51 temperature 25 270 < th dose dependent rect. 10 23
75 218.61 temperature 25 30 < th dose dependent rect. 1 23
77 218.81 temperature 25 30 < th dose dependent rect. 23 23
82 218.93 temperature 25 30 < th dose dependent rect. 11 23
310 230.14 temperature 15 10 > th dose dependent no NA NA
437 234.95 temperature 15 90 > th dose dependent rect. 2 23
440 235.08 temperature 15 270 > th dose dependent rect. 13 23
472 236.13 temperature 15 10 > th dose dependent rect. 2 23
676 242.25 temperature 25 270 < th dose dependent sin 21 NA
690 242.56 temperature 15 270 > th dose dependent rect. 11 23
700 242.75 temperature 25 1440 < th dose dependent rect. 4 8
848 245.44 temperature 30 1440 < th dose dependent sin 4 NA
874 245.66 temperature 30 1440 < th dose dependent rect. 21 17
899 245.81 temperature 30 1440 < th dose dependent rect. 21 15
906 245.84 temperature 10 1440 > th dose dependent rect. 3 9
995 246.24 temperature 30 1440 < th dose dependent rect. 21 21