BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0150400 Os11g0150400|AK058243
         (113 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0150400  Dimeric alpha-beta barrel domain containing pr...   186   3e-48
Os01g0516600  Similar to Stable protein 1                          76   6e-15

>Os11g0150400 Dimeric alpha-beta barrel domain containing protein
          Length = 113

 Score =  186 bits (472), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 93/102 (91%)

Query: 1   MGEVKHLCLVKFKEEVLVDDILQGMTKLVSEMDMVKSFEWGKDVLNQEMLTQGFTHVFSL 60
           MGEVKHLCLVKFKEEVLVDDILQGMTKLVSEMDMVKSFEWGKDVLNQEMLTQGFTHVFSL
Sbjct: 1   MGEVKHLCLVKFKEEVLVDDILQGMTKLVSEMDMVKSFEWGKDVLNQEMLTQGFTHVFSL 60

Query: 61  TFASSEDLTTYMSHERHQEFAGTFMAAIDKXXXXXXXXXASK 102
           TFASSEDLTTYMSHERHQEFAGTFMAAIDK         ASK
Sbjct: 61  TFASSEDLTTYMSHERHQEFAGTFMAAIDKVVVVDFPVVASK 102



>Os01g0516600 Similar to Stable protein 1
          Length = 113

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 4/92 (4%)

Query: 2  GEVKHLCLVKFKEEVL---VDDILQGMTKLVSEMDMVKSFEWGKDVLNQEMLTQGFTHVF 58
          G VKH+ L +FKE+V    +D +++G   LV  +  +K+F WG DV + E + QGFTHVF
Sbjct: 9  GVVKHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDV-SIENMHQGFTHVF 67

Query: 59 SLTFASSEDLTTYMSHERHQEFAGTFMAAIDK 90
            TF S+E +  Y+ H  H EFA  F+  ++K
Sbjct: 68 ESTFESTEGVKEYIEHPAHVEFANEFLPVLEK 99



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,549,061
Number of extensions: 76576
Number of successful extensions: 151
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)