BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0150400 Os11g0150400|AK058243
         (113 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22580.1  | chr5:7502709-7503137 FORWARD LENGTH=112            100   2e-22
AT3G17210.1  | chr3:5882318-5882896 FORWARD LENGTH=110             78   7e-16

>AT5G22580.1 | chr5:7502709-7503137 FORWARD LENGTH=112
          Length = 111

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 61/86 (70%)

Query: 5  KHLCLVKFKEEVLVDDILQGMTKLVSEMDMVKSFEWGKDVLNQEMLTQGFTHVFSLTFAS 64
          KHL +VKFKE+  VD+IL+G+  LVS++D VKSFEWG+D  + +ML QGFTH FS+TF +
Sbjct: 7  KHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFEN 66

Query: 65 SEDLTTYMSHERHQEFAGTFMAAIDK 90
           +    + SH  H EF+  F A IDK
Sbjct: 67 KDGYVAFTSHPLHVEFSAAFTAVIDK 92



>AT3G17210.1 | chr3:5882318-5882896 FORWARD LENGTH=110
          Length = 109

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 2  GEVKHLCLVKFKEEVL---VDDILQGMTKLVSEMDMVKSFEWGKDVLNQEMLTQGFTHVF 58
          G VKH+ L  FK+ V    ++++++G   LV+ ++ +K+F WGKDV + E L QG+TH+F
Sbjct: 6  GPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDV-SIENLHQGYTHIF 64

Query: 59 SLTFASSEDLTTYMSHERHQEFAGTFMAAIDK 90
            TF S E +  Y++H  H EFA  F+ ++DK
Sbjct: 65 ESTFESKEAVAEYIAHPAHVEFATIFLGSLDK 96



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,789,256
Number of extensions: 58807
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)