BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0267400 Os01g0267400|J080051F22
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0267400 Protein of unknown function Cys-rich family pr... 264 1e-71
Os06g0266300 72 1e-13
Os03g0830200 Protein of unknown function Cys-rich family pr... 65 9e-12
Os02g0579800 Similar to Fw2.2 64 3e-11
Os04g0461600 Similar to Fw2.2 63 5e-11
>Os01g0267400 Protein of unknown function Cys-rich family protein
Length = 129
Score = 264 bits (674), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MIFVGFIGATCPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGS 60
MIFVGFIGATCPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGS
Sbjct: 1 MIFVGFIGATCPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGS 60
Query: 61 AVACYACGYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTDSGSSAPTVTP 120
AVACYACGYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTDSGSSAPTVTP
Sbjct: 61 AVACYACGYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTDSGSSAPTVTP 120
Query: 121 PAIQTMDEP 129
PAIQTMDEP
Sbjct: 121 PAIQTMDEP 129
>Os06g0266300
Length = 417
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 16/98 (16%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
CPC FGR A+ + G+ SC H L+ LL ++ C + YAC R
Sbjct: 175 CPCITFGRIAEIVDKGST--SCCMHGTLYVLLATIGCQWL--------------YACTKR 218
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
++RA+YNL ++PC D H FC CA+CQEY+E+ +R
Sbjct: 219 SSMRAQYNLQQSPCLDCCVHFFCDSCALCQEYKELEKR 256
>Os03g0830200 Protein of unknown function Cys-rich family protein
Length = 150
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 15/98 (15%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
CPC FGR A+ + G+ SC T L+GLL C FTG + Y+C YR
Sbjct: 39 CPCITFGRVAEMVDRGST--SCGTGGALYGLL----CAFTGCQWI---------YSCTYR 83
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
+R +Y L EA C D H C CA+CQEYRE+ R
Sbjct: 84 GKMRTQYGLAEAGCADCCVHFCCEPCALCQEYRELVAR 121
>Os02g0579800 Similar to Fw2.2
Length = 162
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 21/101 (20%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGL---LTSLCCVFTGGLVLAVPGSAVACYAC 67
CPC FG+ A+ + G+ SC T L+ L LT CV Y+C
Sbjct: 47 CPCITFGQIAEIIDRGS--SSCGTSGALYALVMLLTGCNCV----------------YSC 88
Query: 68 GYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
YR +R++Y L E PC D H FC CA+ QEYRE+++R
Sbjct: 89 FYRAKMRSQYGLQEKPCADCPVHFFCEPCALSQEYRELKKR 129
>Os04g0461600 Similar to Fw2.2
Length = 179
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
CPC FGR A+ + G TS C T ++LA+ Y+C YR
Sbjct: 65 CPCVAFGRIAEIVDQGA---------------TSCCARGTLYMLLAMATGFACAYSCCYR 109
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
L +Y L E PCGD H C CA+CQEYRE++ R
Sbjct: 110 SRLHQQYGLQEKPCGDCCVHWCCGPCALCQEYRELKSR 147
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,076,757
Number of extensions: 211616
Number of successful extensions: 593
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 12
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)