BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0254100 Os01g0254100|AK111762
(1129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0254100 Similar to CTV.2 2275 0.0
Os08g0162100 Similar to CTV.2 1428 0.0
Os03g0254700 Lissencephaly type-1-like homology motif domai... 1410 0.0
Os05g0240200 Similar to CTV.2 423 e-118
>Os01g0254100 Similar to CTV.2
Length = 1129
Score = 2275 bits (5896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1093/1129 (96%), Positives = 1093/1129 (96%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLN 180
LENFRENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGARASPVSVPLAAVPKAGGTYPPLTAHTPFQP 240
WQHQLCKNPRPNPDIKTLFTDHTCTPPNGARASPVSVPLAAVPKAGGTYPPLTAHTPFQP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGARASPVSVPLAAVPKAGGTYPPLTAHTPFQP 240
Query: 241 PPAGPSLAGWMXXXXXXXXXXXXXXXXXXXXXXXXNQAVPIMKRPTITDYQSAESEQLMK 300
PPAGPSLAGWM NQAVPIMKRPTITDYQSAESEQLMK
Sbjct: 241 PPAGPSLAGWMANAAAATSSVPSAVVAASSLPVPPNQAVPIMKRPTITDYQSAESEQLMK 300
Query: 301 RLRPSGHGVDEATYPAPIPQPLWSVEDLPRTVACTLSQGSSVTSMDFHPTRHTLLLVGST 360
RLRPSGHGVDEATYPAPIPQPLWSVEDLPRTVACTLSQGSSVTSMDFHPTRHTLLLVGST
Sbjct: 301 RLRPSGHGVDEATYPAPIPQPLWSVEDLPRTVACTLSQGSSVTSMDFHPTRHTLLLVGST 360
Query: 361 NGEITLWEVGMRERLFSKPFKIWDIQACSPQFQSVAKESSISINRVTWSPDGDLIGVAFA 420
NGEITLWEVGMRERLFSKPFKIWDIQACSPQFQSVAKESSISINRVTWSPDGDLIGVAFA
Sbjct: 361 NGEITLWEVGMRERLFSKPFKIWDIQACSPQFQSVAKESSISINRVTWSPDGDLIGVAFA 420
Query: 421 KHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCGDDRLIKVWDMHGQK 480
KHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCGDDRLIKVWDMHGQK
Sbjct: 421 KHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCGDDRLIKVWDMHGQK 480
Query: 481 LFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLY 540
LFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLY
Sbjct: 481 LFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLY 540
Query: 541 SADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAG 600
SADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAG
Sbjct: 541 SADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAG 600
Query: 601 EDNQIKFWDVDNTTMLSSTEADGGLPGLPRLRFNKEGNLLAVTTVDNGFKILANADGLRT 660
EDNQIKFWDVDNTTMLSSTEADGGLPGLPRLRFNKEGNLLAVTTVDNGFKILANADGLRT
Sbjct: 601 EDNQIKFWDVDNTTMLSSTEADGGLPGLPRLRFNKEGNLLAVTTVDNGFKILANADGLRT 660
Query: 661 LRAFGNRPFEAFRSQYEASSMKVSGAPVVAGISPNIGRMDHIDRNSPAKPSPIMNGGDPA 720
LRAFGNRPFEAFRSQYEASSMKVSGAPVVAGISPNIGRMDHIDRNSPAKPSPIMNGGDPA
Sbjct: 661 LRAFGNRPFEAFRSQYEASSMKVSGAPVVAGISPNIGRMDHIDRNSPAKPSPIMNGGDPA 720
Query: 721 SRSIDIKPRISEERPDKAKPWELMEVLNAQQCRVATMPETPDQASKVVRLLYTNSGVGLL 780
SRSIDIKPRISEERPDKAKPWELMEVLNAQQCRVATMPETPDQASKVVRLLYTNSGVGLL
Sbjct: 721 SRSIDIKPRISEERPDKAKPWELMEVLNAQQCRVATMPETPDQASKVVRLLYTNSGVGLL 780
Query: 781 ALGSNAIQRLWKWARNDQNPSGKATANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALS 840
ALGSNAIQRLWKWARNDQNPSGKATANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALS
Sbjct: 781 ALGSNAIQRLWKWARNDQNPSGKATANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALS 840
Query: 841 KNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIY 900
KNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIY
Sbjct: 841 KNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIY 900
Query: 901 NVRVDEVKTRLKGHQRRITGLAFSNNLQILVSSGADAQLCVWATDTWEKKKSVAIQMPAG 960
NVRVDEVKTRLKGHQRRITGLAFSNNLQILVSSGADAQLCVWATDTWEKKKSVAIQMPAG
Sbjct: 901 NVRVDEVKTRLKGHQRRITGLAFSNNLQILVSSGADAQLCVWATDTWEKKKSVAIQMPAG 960
Query: 961 KTPSGDTWVQFNSDWSRLLVVHETQLAIYDASKMERIYQWIPQDALSAPISHASYSRNSQ 1020
KTPSGDTWVQFNSDWSRLLVVHETQLAIYDASKMERIYQWIPQDALSAPISHASYSRNSQ
Sbjct: 961 KTPSGDTWVQFNSDWSRLLVVHETQLAIYDASKMERIYQWIPQDALSAPISHASYSRNSQ 1020
Query: 1021 LVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPSVYPLVVAAHPQESNQFAVG 1080
LVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPSVYPLVVAAHPQESNQFAVG
Sbjct: 1021 LVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPSVYPLVVAAHPQESNQFAVG 1080
Query: 1081 LSDGSVKVIEPLESEGKWGTTPPTENGVPNGRXXXXXXXXXXXXDQIQR 1129
LSDGSVKVIEPLESEGKWGTTPPTENGVPNGR DQIQR
Sbjct: 1081 LSDGSVKVIEPLESEGKWGTTPPTENGVPNGRTSTSSATSNPAADQIQR 1129
>Os08g0162100 Similar to CTV.2
Length = 1133
Score = 1428 bits (3696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/1129 (63%), Positives = 869/1129 (76%), Gaps = 35/1129 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMK+FE+ V GEWDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDRHDRAKAV+ILVKDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLN 180
LENFR+NEQLSKYGDTKSAR+IML+ELKKLIEANPLFR+KL FP K SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPP-NGARASP-VSVPLAA-VPKAGGTYPPLTAHTP 237
WQHQLCKNPRPNPDIKTLFTDH+C P NGARA P + PL +PK+ +PP+ AH P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAA-FPPMGAHAP 239
Query: 238 FQP--PPAGPSLAGWMXXXXXXXXXXXXXXXXXXXXXXXXNQAVPIMKRPTI------TD 289
FQP P+ ++AGWM A +K P D
Sbjct: 240 FQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAA--FLKHPRTPTSAPAID 297
Query: 290 YQSAESEQLMKRLR---PSGHGVDEATYPAPIPQPLWSVEDLPRTVACTLSQGSSVTSMD 346
YQSA+SE LMKR+R P A++PA I ++ +DLP+ V L+QGS+V S+D
Sbjct: 298 YQSADSEHLMKRMRVGQPDEVSFSGASHPANI----YTQDDLPKQVVRNLNQGSNVMSLD 353
Query: 347 FHPTRHTLLLVGSTNGEITLWEVGMRERLFSKPFKIWDIQACSPQFQS-VAKESSISINR 405
FHP + T+LLVG+ G+I +WEVG RER+ K FK+WDI +C+ Q+ + K+++IS+NR
Sbjct: 354 FHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNR 413
Query: 406 VTWSPDGDLIGVAFAKHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTC 465
WSPDG ++GVAF+KH++ +A+ E RQ EIDAH G VNDIAFS PNK L ++TC
Sbjct: 414 CLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITC 473
Query: 466 GDDRLIKVWDMH-GQKLFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGS 524
GDD+LIKVWD GQK ++FEGHEAPVYS+CPH+KESIQFIFST++DGKIKAWLYD +GS
Sbjct: 474 GDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGS 533
Query: 525 RVDYDAPGKWCTTMLYSADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGV 584
RVDYDAPG WCTTM YSADGTRLFSCGTSKDGDS+LVEWNE+EG+IKRTY+GFRK+S +
Sbjct: 534 RVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRS--L 591
Query: 585 GVVQFDTAQNHILAAGEDNQIKFWDVDNTTMLSSTEADGGLPGLPRLRFNKEGNLLAVTT 644
GVVQFDT +N LAAG++ +KFWD+DNT +L++T+ DGGLP PRLRFN+EG+LLAVT
Sbjct: 592 GVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTA 651
Query: 645 VDNGFKILANADGLRTLRAFGNRPFEAFRSQYEASSMKVSGAPVVAGISPNIGRMDHIDR 704
+NG KILAN DG R LR +R +E R + + K + +S N+ ++
Sbjct: 652 NENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVS-NVSSPMAVNS 710
Query: 705 NSP--AKPSPIMNGGDP--ASRSIDIKPRISEERPDKAKPWELMEVLNAQQCRVATMPET 760
P A P+ M+G P SR+ D+KPRI++E +K K W+L ++ ++ R MP+T
Sbjct: 711 ERPDRALPTVSMSGLAPMDVSRTPDVKPRITDES-EKVKTWKLADIGDSGHLRALRMPDT 769
Query: 761 PDQASKVVRLLYTNSGVGLLALGSNAIQRLWKWARNDQNPSGKATANVVPQHWQPNSGLV 820
+SKVVRLLYTN+GV LLALGSNA+ +LWKW R D+NP+GK+TA+ PQ WQP +G++
Sbjct: 770 SATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQPANGIL 829
Query: 821 MQNDTADTNPEDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAF 880
M NDT+D NPE+A CIALSKNDSYVMSA GGKVSLFNMMTFKVMTTFM PPPA+TFLAF
Sbjct: 830 MANDTSDGNPEEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAF 889
Query: 881 HPQDNNIIAIGMEDSTIHIYNVRVDEVKTRLKGHQRRITGLAFSNNLQILVSSGADAQLC 940
HPQDNNIIAIGMEDSTI IYNVRVDEVK++LKGH ++ITGLAFS ++ +LVSSGADAQLC
Sbjct: 890 HPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLC 949
Query: 941 VWATDTWEKKKSVAIQMPAGKTPS--GDTWVQFNSDWSRLLVVHETQLAIYDASKMERIY 998
W+ D WEKKKS IQ PA ++ + GDT VQF++D + +LVVHE+QLAIYDA K+E +
Sbjct: 950 AWSIDGWEKKKSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDA-KLECLR 1008
Query: 999 QWIPQDALSAPISHASYSRNSQLVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINS 1058
W P++AL APIS A YS + L++A F DG IG+F+ E+LRLRCRIAP AY+ +++S
Sbjct: 1009 SWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYI-PPSMSS 1067
Query: 1059 NPSVYPLVVAAHPQESNQFAVGLSDGSVKVIEPLESEGKWGTTPPTENG 1107
SVYP+VVAAHP E NQ AVG+SDG+V V+EPL+S+ KWG PP +NG
Sbjct: 1068 GGSVYPMVVAAHPLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNG 1116
>Os03g0254700 Lissencephaly type-1-like homology motif domain containing protein
Length = 1133
Score = 1410 bits (3649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1126 (62%), Positives = 858/1126 (76%), Gaps = 32/1126 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKYFE++V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVINGNWDEVERYLGGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR+KAV+ILVKDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IML+ELKKLIEANPLFR+KL FP LK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGARA-SPVSVP-LAAVPKAGGTYPPLTAHTPF 238
WQHQLCKNPRPNPDIKTLF DH+C PNGARA SP + P L ++PK GG +PPL AH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSIPKPGG-FPPLGAHAPF 239
Query: 239 QPPPAG-PSLAGWMXXXXXXXXXXXXXXXXXXXXXXXXNQAVPIMKRPTIT----DYQSA 293
QP P P LAGWM + + PT DY S
Sbjct: 240 QPAPTPVPPLAGWMSNPPAVTHPAVSGGAIGFGTPTNPAAILKHPRTPTTANPSMDYPSG 299
Query: 294 ESEQLMKRLRPSGHGVDEATYPA---PIPQPL---WSVEDLPRTVACTLSQGSSVTSMDF 347
+S+ + KR RP G +E P P+ P + +D + VA TLSQGS+ SMDF
Sbjct: 300 DSDHVSKRTRPVGMS-EEVNLPVNMLPVTYPQSHSYPQDDFHKNVARTLSQGSTPMSMDF 358
Query: 348 HPTRHTLLLVGSTNGEITLWEVGMRERLFSKPFKIWDIQACSPQFQ-SVAKESSISINRV 406
HP + TLLLVG+ G+I LW+VG +ERL + FK+WD+ CS Q S+ K+ ++S+NR+
Sbjct: 359 HPVQQTLLLVGTNVGDIGLWDVGTKERLVLRNFKVWDLTKCSMALQASLVKDPTVSVNRI 418
Query: 407 TWSPDGDLIGVAFAKHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCG 466
WSPDG L GVA+++H++ +++Y ++ RQ LEIDAH G VNDIAF+ PNKQLC++TCG
Sbjct: 419 IWSPDGTLFGVAYSRHIVQIYSYHGGDDIRQHLEIDAHVGGVNDIAFAHPNKQLCIITCG 478
Query: 467 DDRLIKVWD-MHGQKLFSFEGHEAPVYSICPHHKESIQFIFSTSLDGKIKAWLYDHMGSR 525
DD+ IKVW+ G K F+FEGHEAPVYS+CPH+KE+IQFIFST+LDGKIKAWLYD++GSR
Sbjct: 479 DDKTIKVWEATSGAKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSR 538
Query: 526 VDYDAPGKWCTTMLYSADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVG 585
VDYDAPG WCTTM YSADG+RLFSCGTSKDG+S+LVEWNESEG++KRTY GFRK+S +G
Sbjct: 539 VDYDAPGHWCTTMAYSADGSRLFSCGTSKDGESHLVEWNESEGAVKRTYQGFRKRS--MG 596
Query: 586 VVQFDTAQNHILAAGEDNQIKFWDVDNTTMLSSTEADGGLPGLPRLRFNKEGNLLAVTTV 645
VVQFDT +N LAAG++ IK WD+DNT++L++ +ADGGLP PR+RFNKEG LLAV+T
Sbjct: 597 VVQFDTTRNRFLAAGDEFLIKIWDMDNTSLLTTIDADGGLPASPRVRFNKEGTLLAVSTH 656
Query: 646 DNGFKILANADGLRTLRAFGNRPFEAFRSQYEASSMKVSGAPVVAGISPNIGRMDHIDRN 705
+NG KILANADG+R LR NR F+A RS E + + A +
Sbjct: 657 ENGIKILANADGVRLLRTLENRSFDASRSASETVTKPLMNPLTAAAAAAASAAAAGTSSG 716
Query: 706 SPAKPSPIMNGGDPASRS-IDIKPRISEERPDKAKPWELMEVLNAQQCRVATMPETPDQA 764
+ A P+ GD SRS +D+KPRI++E DK+K W+LME+ + QCR + + +
Sbjct: 717 NAAPPAITALNGD--SRSLVDVKPRIADEPLDKSKVWKLMEITESSQCRSLKLTDNM-RT 773
Query: 765 SKVVRLLYTNSGVGLLALGSNAIQRLWKWARNDQNPSGKATANVVPQHWQPNSGLVMQND 824
SK+ RL+YTNSGV +LAL SNA+ LWKW RND+N SGKATA+V PQ WQP SG++M ND
Sbjct: 774 SKISRLIYTNSGVAILALASNAVHLLWKWPRNDRNSSGKATASVSPQLWQPPSGILMTND 833
Query: 825 TADTNPEDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQD 884
D NPE+AV C ALSKNDSYVMSA GGK+SLFNMMTFK MTTFMPPPPA+TFLAFHPQD
Sbjct: 834 ITD-NPEEAVHCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 892
Query: 885 NNIIAIGMEDSTIHIYNVRVDEVKTRLKGHQRRITGLAFSNNLQILVSSGADAQLCVWAT 944
NNIIAIGM+DSTI IYNVR+DEVK++L+GH ++ITGLAFSN L +LVSSGADAQ+CVW+T
Sbjct: 893 NNIIAIGMDDSTIQIYNVRIDEVKSKLRGHSKKITGLAFSNVLNVLVSSGADAQICVWST 952
Query: 945 DTWEKKKSVAIQMPAGKTPSG---DTWVQFNSDWSRLLVVHETQLAIYDASKMERIYQWI 1001
D W+K KS +Q+P+ + PS DT VQF+ D LVVHETQ+AIY+ +K+E + QW
Sbjct: 953 DGWDKLKSRMLQIPSSR-PSSIILDTRVQFHQDQLHFLVVHETQIAIYETTKLEPVKQW- 1010
Query: 1002 PQDALSAPISHASYSRNSQLVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPS 1061
P S+PI+HA +S +SQL++A+F D + IF+ +LRL+CRI P +YL N + +
Sbjct: 1011 PVRENSSPITHAMFSCDSQLIYASFLDATVCIFNASSLRLQCRILPASYLPQ---NISSN 1067
Query: 1062 VYPLVVAAHPQESNQFAVGLSDGSVKVIEPLESEGKWGTTPPTENG 1107
VYP+VVAAHP E+NQFA+GL+DG V V+EPLESE KWG PP ENG
Sbjct: 1068 VYPVVVAAHPSEANQFALGLTDGGVYVLEPLESERKWGNPPPAENG 1113
>Os05g0240200 Similar to CTV.2
Length = 1315
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/351 (58%), Positives = 264/351 (75%), Gaps = 4/351 (1%)
Query: 746 VLNAQQCRVATMPETPDQASKVVRLLYTNSGVGLLALGSNAIQRLWKWARNDQNPSGKAT 805
++++ + R MP T +SKV+ LLY SG GLLAL SNA+ +LWKW ND+NP+G +T
Sbjct: 949 IVSSGRIRALRMPVTEASSSKVICLLYRKSGKGLLALSSNAVHKLWKWESNDKNPAGMST 1008
Query: 806 ANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVM 865
+V PQ WQP S ++M NDTA+ NPE+A C LSKND Y++SA GGKVSLFNM+ FK M
Sbjct: 1009 TSVPPQVWQPESDILM-NDTANGNPEEAAACSLLSKNDCYLISASGGKVSLFNMLNFKTM 1067
Query: 866 TTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKTRLKGHQRRITGLAFSN 925
TTF+ PPP++TFLAFHP DNNIIAIG +DS+I +YN+RVDEVK LKGHQ++ITGL FS
Sbjct: 1068 TTFIAPPPSATFLAFHPHDNNIIAIGTDDSSILLYNIRVDEVKWVLKGHQKKITGLVFSL 1127
Query: 926 NLQILVSSGADAQLCVWATDTWEKKKSVAIQMPAGKTPS--GDTWVQFNSDWSRLLVVHE 983
++ +LVSSGAD+QLCVW+ + W KKKS IQ P+ + + GD VQF+ D RLLVVHE
Sbjct: 1128 SMNVLVSSGADSQLCVWSMEDWAKKKSRYIQPPSNHSGALVGDIMVQFHYDQKRLLVVHE 1187
Query: 984 TQLAIYDASKMERIYQWIPQDALSAPISHASYSRNSQLVFAAFTDGNIGIFDVENLRLRC 1043
+QLAIYD ++E + W P D LSAP+S A YS + L++A F DG IGIF VE+L L+C
Sbjct: 1188 SQLAIYD-EELECLCSWFPSDPLSAPVSSAVYSSDGLLIYAGFCDGAIGIFQVESLMLQC 1246
Query: 1044 RIAPPAYLSSAAINSNPSVYPLVVAAHPQESNQFAVGLSDGSVKVIEPLES 1094
RIAP AY+ S+ + VYP+VVAAHP + NQFAVG+SDG+V V+EPL++
Sbjct: 1247 RIAPSAYIPSSVSSGGEIVYPMVVAAHPWKPNQFAVGMSDGAVHVLEPLDT 1297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 40,846,715
Number of extensions: 1824259
Number of successful extensions: 6278
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 6235
Number of HSP's successfully gapped: 6
Length of query: 1129
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1017
Effective length of database: 11,187,833
Effective search space: 11378026161
Effective search space used: 11378026161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)