Os01g0254100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CTV.2.
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Os01g0254100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CTV.2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.98 | 0.304 | 10.6 | 1.42 | 1.17 | 0.637 | -0.919 | -0.181 | 0.82 | 0.802 | 89.29 | 318 | -- | -- |
| 42.04 | 0.302 | 10.6 | 1.42 | 1.17 | 0.637 | -0.941 | -- | 0.818 | 0.804 | 89.3 | 318 | -- | -- |
| 45.35 | 0.314 | 10.6 | 1.48 | 1.18 | 0.624 | -- | -0.521 | 0.82 | 0.938 | 90.47 | 297 | -- | -- |
| 45.64 | 0.315 | 10.6 | 1.45 | 1.22 | 0.612 | -- | -- | 0.819 | 0.873 | 89.65 | 379 | -- | -- |
| 72.62 | 0.397 | 10.5 | 1.72 | -- | 1.23 | -- | -1.14 | 0.8 | -- | 66.93 | 7 | -- | -- |
| 49.4 | 0.329 | 10.6 | 1.49 | 1.3 | -- | -0.776 | -- | 0.719 | 1.57 | -- | -- | -- | -- |
| 51.8 | 0.337 | 10.6 | 1.52 | 1.3 | -- | -- | -- | 0.723 | 1.6 | -- | -- | -- | -- |
| 72.47 | 0.396 | 10.6 | 1.52 | -- | 1.21 | -- | -- | 0.818 | -- | 64.59 | 2 | -- | -- |
| 99.31 | 0.464 | 10.6 | -- | 1.21 | 0.825 | -- | -- | 0.694 | 0.407 | 86.38 | 384 | -- | -- |
| 155.28 | 0.582 | 10.6 | 1.57 | -- | -- | -- | -- | 0.752 | -- | -- | -- | -- | -- |
| 112.46 | 0.496 | 10.6 | -- | 1.33 | -- | -- | -- | 0.554 | 1.64 | -- | -- | -- | -- |
| 133.54 | 0.538 | 10.6 | -- | -- | 1.24 | -- | -- | 0.649 | -- | 64.28 | 2 | -- | -- |
| 220.27 | 0.693 | 10.6 | -- | -- | -- | -- | -- | 0.577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.34 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 7 | 38.66 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 34 | 39.32 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 56 | 39.66 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 73 | 39.94 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 77 | 39.98 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 99 | 40.25 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 120 | 40.39 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 123 | 40.40 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 146 | 40.60 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 165 | 40.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 172 | 40.80 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 173 | 40.81 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 187 | 40.90 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 212 | 41.01 | humidity | 70.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 213 | 41.01 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 230 | 41.07 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 236 | 41.10 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 248 | 41.16 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 249 | 41.17 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 265 | 41.22 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 273 | 41.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 299 | 41.30 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 14 | 9 |
| 322 | 41.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 7 |
| 326 | 41.40 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 332 | 41.41 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 342 | 41.42 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 360 | 41.47 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 368 | 41.48 | humidity | 90.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 369 | 41.48 | humidity | 80.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 405 | 41.56 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 2 | 11 |
| 414 | 41.58 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 9 |
| 422 | 41.59 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 469 | 41.71 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 16 |
| 471 | 41.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 472 | 41.71 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 487 | 41.74 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 5 | 7 |
| 491 | 41.75 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 6 |
| 492 | 41.75 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 493 | 41.75 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 544 | 41.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 554 | 41.84 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 559 | 41.85 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 562 | 41.85 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 564 | 41.85 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 572 | 41.86 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 585 | 41.88 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 615 | 41.90 | wind | 7.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 616 | 41.90 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 629 | 41.91 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 630 | 41.91 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 631 | 41.91 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 634 | 41.91 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 635 | 41.91 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 640 | 41.91 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 642 | 41.91 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 643 | 41.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 23 |
| 645 | 41.91 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 655 | 41.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 689 | 41.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 17 |
| 692 | 41.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 17 |
| 753 | 42.04 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 838 | 42.10 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 901 | 42.18 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 920 | 42.20 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 928 | 42.21 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 18 |
| 933 | 42.21 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 955 | 42.24 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 5 |
| 962 | 42.25 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 9 |
| 978 | 42.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 990 | 42.28 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 999 | 42.29 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 18 |