Os05g0240200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CTV.2.
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Os05g0240200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CTV.2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.22 | 0.456 | 6.45 | -0.491 | 0.806 | 1.29 | -0.632 | -1.19 | 0.682 | 23.4 | 19.69 | 1849 | -- | -- |
| 96.77 | 0.458 | 6.42 | -0.351 | 0.764 | 1.43 | -0.624 | -- | 0.715 | 23.4 | 19.6 | 1988 | -- | -- |
| 95.64 | 0.455 | 6.45 | -0.458 | 0.771 | 1.22 | -- | -1.09 | 0.69 | 23.4 | 19.5 | 2059 | -- | -- |
| 96.9 | 0.458 | 6.43 | -0.527 | 0.805 | 1.64 | -- | -- | 0.668 | 23.4 | 19 | 3331 | -- | -- |
| 130.22 | 0.531 | 6.44 | -0.533 | -- | 1.39 | -- | -0.916 | 0.638 | -- | 19.64 | 2279 | -- | -- |
| 133.48 | 0.542 | 6.35 | 0.286 | 0.824 | -- | -0.558 | -- | 1 | 23.3 | -- | -- | -- | -- |
| 134.81 | 0.544 | 6.35 | 0.308 | 0.827 | -- | -- | -- | 1 | 23.4 | -- | -- | -- | -- |
| 131.08 | 0.533 | 6.41 | -0.455 | -- | 1.63 | -- | -- | 0.683 | -- | 19 | 2354 | -- | -- |
| 101.49 | 0.469 | 6.39 | -- | 0.808 | 1.56 | -- | -- | 0.786 | 23.2 | 18.08 | 3426 | -- | -- |
| 177.66 | 0.623 | 6.33 | 0.33 | -- | -- | -- | -- | 1.01 | -- | -- | -- | -- | -- |
| 137.32 | 0.548 | 6.36 | -- | 0.83 | -- | -- | -- | 0.97 | 23.4 | -- | -- | -- | -- |
| 135.12 | 0.541 | 6.38 | -- | -- | 1.51 | -- | -- | 0.786 | -- | 18.36 | 2319 | -- | -- |
| 180.52 | 0.627 | 6.34 | -- | -- | -- | -- | -- | 0.976 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.60 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 2 | 94.64 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 3 | 94.66 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 4 | 94.72 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 10 |
| 5 | 94.74 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 24 | 95.14 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 26 | 95.17 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 28 | 95.20 | temperature | 20.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 29 | 95.21 | temperature | 20.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 42 | 95.47 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 60 | 95.56 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 64 | 95.60 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 100 | 95.99 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 125 | 96.20 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 129 | 96.23 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 145 | 96.29 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 158 | 96.35 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 162 | 96.36 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 163 | 96.36 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 164 | 96.36 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 9 |
| 194 | 96.46 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 216 | 96.52 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 225 | 96.54 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 239 | 96.57 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 256 | 96.61 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 301 | 96.71 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 314 | 96.73 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 328 | 96.76 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 334 | 96.76 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 10 | NA |
| 422 | 96.93 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 6 |
| 427 | 96.94 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 4 |
| 453 | 96.98 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 455 | 96.99 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 468 | 97.01 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 522 | 97.07 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 526 | 97.08 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 540 | 97.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 544 | 97.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 558 | 97.12 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 561 | 97.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 571 | 97.13 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 577 | 97.14 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 598 | 97.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 604 | 97.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 622 | 97.20 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 623 | 97.20 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 624 | 97.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 646 | 97.23 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 668 | 97.25 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 669 | 97.26 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 680 | 97.27 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 699 | 97.30 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 709 | 97.31 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 731 | 97.33 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 743 | 97.34 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 757 | 97.36 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 791 | 97.41 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 801 | 97.42 | wind | 9.0 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 832 | 97.46 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 833 | 97.46 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 866 | 97.50 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 877 | 97.52 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 933 | 97.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 937 | 97.60 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 949 | 97.61 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 959 | 97.63 | wind | 9.0 | 43200 | > th | dose independent | rect. | 7 | 9 |