Os03g0254700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lissencephaly type-1-like homology motif domain containing protein.
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Os03g0254700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lissencephaly type-1-like homology motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.65 | 0.224 | 12.5 | 0.235 | 0.462 | 0.366 | 0.0869 | -0.849 | 0.212 | 22 | 90.71 | 277 | -- | -- |
| 23.7 | 0.227 | 12.5 | 0.208 | 0.49 | 0.375 | 0.141 | -- | 0.21 | 22 | 90.86 | 375 | -- | -- |
| 22.64 | 0.222 | 12.5 | 0.233 | 0.459 | 0.385 | -- | -0.956 | 0.211 | 22.2 | 91.71 | 284 | -- | -- |
| 23.77 | 0.227 | 12.5 | 0.207 | 0.484 | 0.356 | -- | -- | 0.207 | 22.1 | 90.67 | 374 | -- | -- |
| 31.91 | 0.265 | 12.5 | 0.223 | -- | 0.32 | -- | -0.292 | 0.206 | -- | 81.05 | 11 | -- | -- |
| 25.68 | 0.238 | 12.5 | 0.24 | 0.44 | -- | 0.0308 | -- | 0.153 | 23.1 | -- | -- | -- | -- |
| 25.68 | 0.237 | 12.5 | 0.238 | 0.44 | -- | -- | -- | 0.153 | 23.1 | -- | -- | -- | -- |
| 32.07 | 0.265 | 12.5 | 0.223 | -- | 0.302 | -- | -- | 0.191 | -- | 77 | 12 | -- | -- |
| 24.84 | 0.232 | 12.5 | -- | 0.497 | 0.38 | -- | -- | 0.19 | 22 | 89.95 | 379 | -- | -- |
| 37.74 | 0.287 | 12.5 | 0.249 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 27.18 | 0.244 | 12.5 | -- | 0.442 | -- | -- | -- | 0.127 | 23.2 | -- | -- | -- | -- |
| 33.37 | 0.27 | 12.5 | -- | -- | 0.312 | -- | -- | 0.171 | -- | 77.76 | 6 | -- | -- |
| 39.37 | 0.293 | 12.5 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.82 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 21.86 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 11 | 22.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 15 | 22.23 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 20 | 22.30 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 21 | 22.30 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 24 | 22.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 25 | 22.32 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 26 | 22.33 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 29 | 22.36 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 34 | 22.42 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 36 | 22.43 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 12 |
| 52 | 22.47 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 65 | 22.51 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 69 | 22.52 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 71 | 22.52 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 73 | 22.52 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 99 | 22.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 125 | 22.52 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 127 | 22.52 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 129 | 22.52 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 192 | 22.54 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 197 | 22.55 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 200 | 22.56 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 215 | 22.58 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 227 | 22.60 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 230 | 22.62 | humidity | 90.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 292 | 22.70 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 323 | 22.73 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 335 | 22.76 | humidity | 90.0 | 270 | > th | dose independent | rect. | 20 | 12 |
| 336 | 22.76 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 16 |
| 339 | 22.77 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 347 | 22.79 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 348 | 22.79 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 350 | 22.79 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 373 | 22.81 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 395 | 22.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 396 | 22.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 407 | 22.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 408 | 22.83 | temperature | 25.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 410 | 22.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 426 | 22.85 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 429 | 22.85 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 467 | 22.87 | radiation | 1.0 | 720 | > th | dose independent | sin | 13 | NA |
| 595 | 22.94 | humidity | 90.0 | 90 | > th | dose independent | rect. | 5 | 5 |
| 600 | 22.94 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 602 | 22.94 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 5 | 5 |
| 616 | 22.96 | humidity | 90.0 | 270 | > th | dose independent | sin | 9 | NA |
| 617 | 22.96 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 629 | 22.97 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 635 | 22.97 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 645 | 22.98 | radiation | 1.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 652 | 22.98 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 667 | 22.99 | humidity | 90.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 668 | 22.99 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 673 | 23.00 | radiation | 1.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 685 | 23.00 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 707 | 23.02 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 712 | 23.02 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 19 | 13 |
| 741 | 23.03 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 758 | 23.04 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 889 | 23.09 | radiation | 1.0 | 720 | < th | dose independent | rect. | 21 | 22 |
| 924 | 23.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 931 | 23.13 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 940 | 23.14 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 956 | 23.15 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 974 | 23.15 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 981 | 23.16 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 986 | 23.17 | temperature | 25.0 | 90 | > th | dose independent | sin | 12 | NA |
| 987 | 23.17 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 1 |