BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0253300 Os01g0253300|AK068233
(526 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0253300 Importin alpha-1a subunit 975 0.0
Os05g0155500 Importin alpha-1b subunit 803 0.0
AK100133 744 0.0
Os01g0343200 Similar to Importin alpha-1b subunit 676 0.0
Os07g0688300 Similar to Importin alpha 1 430 e-120
Os01g0158000 Importin alpha-2 subunit 149 5e-36
>Os01g0253300 Importin alpha-1a subunit
Length = 526
Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/509 (94%), Positives = 479/509 (94%)
Query: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIXXXXXXXXXXXXXXXGLQAQAPVP 60
MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEI GLQAQAPVP
Sbjct: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60
Query: 61 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF
Sbjct: 61 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120
Query: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180
VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180
Query: 181 ALGNVAGDSPKCRDXXXXXXXXXXXXXXXNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240
ALGNVAGDSPKCRD NEHTKLSMLRNATWTLSNFCRGKPQPSFEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240
Query: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300
Query: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360
LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360
Query: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 420
QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 420
Query: 421 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 480
LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE
Sbjct: 421 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 480
Query: 481 IYEKAVKILEAYWMDEEDDTMGATTVAAP 509
IYEKAVKILEAYWMDEEDDTMGATTVAAP
Sbjct: 481 IYEKAVKILEAYWMDEEDDTMGATTVAAP 509
>Os05g0155500 Importin alpha-1b subunit
Length = 534
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/508 (77%), Positives = 433/508 (85%), Gaps = 8/508 (1%)
Query: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIXXXXXXXXXXXXXXXGL------- 53
MSLRPSER EVRR+RYKVAVDA+EGRRRREDNMVEI GL
Sbjct: 1 MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60
Query: 54 QAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ 113
A +P+ A + + + +KLE LPAM+ V SDD+ +QLEATTQFRKLLSIERSPPIEEVI
Sbjct: 61 AAASPLLAHS-SALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVIN 119
Query: 114 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDD 173
+GVVPRF+ FL RED+PQLQFEAAWALTNIASGTS+NTKVV++ GAVPIFVKLL S S+D
Sbjct: 120 TGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSED 179
Query: 174 VREQAVWALGNVAGDSPKCRDXXXXXXXXXXXXXXXNEHTKLSMLRNATWTLSNFCRGKP 233
VREQAVWALGNVAGDSPKCRD NEH KLSMLRNATWTLSNFCRGKP
Sbjct: 180 VREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKP 239
Query: 234 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 293
QP+FEQ +PAL AL RLIHS DEEVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL
Sbjct: 240 QPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELL 299
Query: 294 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 353
+HPS SVLIPALRTVGNIVTGDD QTQC+IDHQALPCLL+LLT N KKSIKKEACWTISN
Sbjct: 300 MHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISN 359
Query: 354 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 413
ITAGN++QIQAVINA II PLV+LLQTAEFDIKKEAAWAISNATSGG+HDQIKYLV++GC
Sbjct: 360 ITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGC 419
Query: 414 IKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 473
IKPLCDLL+CPD RIVTVCLEGLENILKVGE +K L AGDVN ++QMID+AEGLEKIENL
Sbjct: 420 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENL 479
Query: 474 QSHDNNEIYEKAVKILEAYWMDEEDDTM 501
QSHDN EIYEKAVK+LE+YW++EEDD M
Sbjct: 480 QSHDNTEIYEKAVKMLESYWLEEEDDAM 507
>AK100133
Length = 504
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/438 (81%), Positives = 391/438 (89%)
Query: 64 ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQF 123
++ + +KLE LPAM+ V SDD+ +QLEATTQFRKLLSIERSPPIEEVI +GVVPRF+ F
Sbjct: 40 SSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAF 99
Query: 124 LTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALG 183
L RED+PQLQFEAAWALTNIASGTS+NTKVV++ GAVPIFVKLL S S+DVREQAVWALG
Sbjct: 100 LQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALG 159
Query: 184 NVAGDSPKCRDXXXXXXXXXXXXXXXNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPA 243
NVAGDSPKCRD NEH KLSMLRNATWTLSNFCRGKPQP+FEQ +PA
Sbjct: 160 NVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPA 219
Query: 244 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 303
L AL RLIHS DEEVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL+HPS SVLIP
Sbjct: 220 LSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIP 279
Query: 304 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 363
ALRTVGNIVTGDD QTQC+IDHQALPCLL+LLT N KKSIKKEACWTISNITAGN++QIQ
Sbjct: 280 ALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQ 339
Query: 364 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC 423
AVINA II PLV+LLQTAEFDIKKEAAWAISNATSGG+HDQIKYLV++GCIKPLCDLL+C
Sbjct: 340 AVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVC 399
Query: 424 PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYE 483
PD RIVTVCLEGLENILKVGE +K L AGDVN ++QMID+AEGLEKIENLQSHDN EIYE
Sbjct: 400 PDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYE 459
Query: 484 KAVKILEAYWMDEEDDTM 501
KAVK+LE+YW++EEDD M
Sbjct: 460 KAVKMLESYWLEEEDDAM 477
>Os01g0343200 Similar to Importin alpha-1b subunit
Length = 564
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/502 (65%), Positives = 395/502 (78%), Gaps = 4/502 (0%)
Query: 1 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIXXXXXXXXXXXXXX--XGLQAQAP 58
MSLRPSER+ +R+ YK ++DA EGRRRRED V + A
Sbjct: 1 MSLRPSERMGIRQKGYKASMDAAEGRRRREDITVILRKADRDRALKEKRRRPTATAAAEG 60
Query: 59 VPASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVV 117
+P +A ++ ++KKLESLP M+ G+YSDD+++QLE+TTQFRKLLS++ PPI+EVI+SGV+
Sbjct: 61 LPQAAHSSAIEKKLESLPMMVQGLYSDDSSMQLESTTQFRKLLSVDHCPPIDEVIRSGVL 120
Query: 118 PRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQ 177
PRFV+FLTRE++PQLQFEAAWALTNIASGT+ NT VI+HGAVPIFVKLL S +DVREQ
Sbjct: 121 PRFVEFLTREEYPQLQFEAAWALTNIASGTAANTMAVIEHGAVPIFVKLLSSPREDVREQ 180
Query: 178 AVWALGNVAGDSPKCRDXXXXXXXXXXXXXXXNEHTKLSMLRNATWTLSNFCRGKPQPSF 237
AVWALGNVAGDS KCR+ NEH KLSMLRN+ WTLSNFCRGKPQP F
Sbjct: 181 AVWALGNVAGDSTKCRNLVLMHGAMLPLLQQLNEHAKLSMLRNSAWTLSNFCRGKPQPDF 240
Query: 238 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 297
+ PALP L LI S DEE+LTD+CWALSYLSDG+ND IQAVIE GVC LVELL HPS
Sbjct: 241 KHVEPALPVLRELILSQDEEILTDSCWALSYLSDGSNDNIQAVIETGVCDWLVELLSHPS 300
Query: 298 PSVLIPALRTVGNIVTGDDAQTQCIIDH-QALPCLLSLLTQNLKKSIKKEACWTISNITA 356
P VLIPALRTVGNIVTGDDAQTQCI+ H QALPCL +LLT KKS+K+EACWTISNITA
Sbjct: 301 PVVLIPALRTVGNIVTGDDAQTQCIVGHPQALPCLFNLLTTTQKKSVKREACWTISNITA 360
Query: 357 GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 416
G K+QIQAVI++ II PL++LLQ AEFD+KKEA WAISNATSGG+ +QI+YLVS+GCIKP
Sbjct: 361 GTKEQIQAVIDSNIIAPLLHLLQHAEFDVKKEAVWAISNATSGGTFNQIEYLVSQGCIKP 420
Query: 417 LCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH 476
LCDLL+ D + V CLE L+NIL+VGE K L A ++N+F M+DEA+GL+KIE+LQ+H
Sbjct: 421 LCDLLVHQDSKTVLTCLEALDNILRVGEAKKNLGACNMNIFVPMVDEADGLDKIEDLQNH 480
Query: 477 DNNEIYEKAVKILEAYWMDEED 498
DN EIY KAV +LE+YW+ E+D
Sbjct: 481 DNVEIYNKAVYVLESYWVQEDD 502
>Os07g0688300 Similar to Importin alpha 1
Length = 462
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/429 (50%), Positives = 296/429 (68%), Gaps = 3/429 (0%)
Query: 71 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFP 130
LE L M+ V+SDD QLEAT QFR+LLS E++P + ++I++ V+PRF FL+R + P
Sbjct: 1 LEGLSEMVEKVWSDDTTSQLEATIQFRRLLSDEKNPTVIKIIRADVLPRFSDFLSRHEHP 60
Query: 131 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 190
QLQ EAAW LTNIA+ S+ T +V + GAVP V+LL S++ ++R QA+WALGN+A D P
Sbjct: 61 QLQMEAAWVLTNIAA--SDYTLLVAECGAVPRLVELLESANANIRHQAIWALGNIAADVP 118
Query: 191 KCRDXXXXXXXXXXXXXXXNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL 250
CR+ E K+ +LR ATW LSN C GK P+ Q +P L +++L
Sbjct: 119 TCREIVLDHGAVTPLLAQFREGMKVPVLRTATWALSNLCFGK-LPAEVQVKPILDIISQL 177
Query: 251 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 310
IHS DE++L DACWAL Y+ DG +D IQ V++AG CP+LV LL+H S ++L+P + +
Sbjct: 178 IHSVDEKILGDACWALCYICDGVSDGIQHVLDAGACPQLVNLLMHASANILLPVITVLAR 237
Query: 311 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 370
I +GDDAQ Q ++++ L L LL +N KSIKK+AC +SNI+ G+KD IQAVI+A +
Sbjct: 238 ISSGDDAQVQVLVENDILNYLAPLLARNYPKSIKKQACLIVSNISTGSKDNIQAVIDADV 297
Query: 371 IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 430
I PL+ LL+T+E DIK+EAAWAISNA SGGS+DQI+YLVS GC++PLC++L D +V
Sbjct: 298 ISPLIFLLKTSEKDIKEEAAWAISNAASGGSNDQIQYLVSRGCLEPLCNVLTYQDADLVY 357
Query: 431 VCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 490
CLEGL+NIL+ G K VN ++Q I E GL+K+E+LQ DN+ IY+ +K+LE
Sbjct: 358 ACLEGLQNILQAGAVGKQGQGSTVNPYAQFILECGGLDKLEDLQEVDNDAIYKLVMKLLE 417
Query: 491 AYWMDEEDD 499
YW +E D
Sbjct: 418 GYWDEEVSD 426
>Os01g0158000 Importin alpha-2 subunit
Length = 528
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/424 (27%), Positives = 204/424 (48%), Gaps = 31/424 (7%)
Query: 89 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS 148
++EA R+LLS P ++ I++G VP VQ+L+ + EAAW LTNIA+G
Sbjct: 109 KIEALRDLRRLLSQPEVPLVDTAIKAGAVPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEP 168
Query: 149 ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDXXXXXXXXXXXXXX 208
E TK ++ + L SS V EQ WA+GNVAG+ + R
Sbjct: 169 EETKSLLPA-LPLLIAHLGEKSSTLVAEQCAWAIGNVAGEGAELRSTLLAQGALRPLTRL 227
Query: 209 XNEHTKLSMLRNATWTLSNFCRG-KPQPSFE--QTRPALPALARLIHSNDEEVLTDACWA 265
+K S R A W +SN +G P+ + E L A+ + DEE+ T+ W
Sbjct: 228 MFS-SKGSTARTAAWAMSNLIKGPDPKAANELITIDGVLNAIIASLEKEDEELATEVAWV 286
Query: 266 LSYLSDGTNDKIQAVIEAGVCPRLV--ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI- 322
+ YLS ++ I ++ + V P+L+ L + +LIP LR +GN++ DD +
Sbjct: 287 VVYLSALSDRGISLIVRSSV-PQLLIGRLFSSENLQLLIPVLRGLGNLIAADDYMVDSVL 345
Query: 323 -IDHQALPCLLSLLTQNLK---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL 378
+ H + LS L + LK + ++KE+ W +SNI AG+ + + + + L+ L+
Sbjct: 346 TVGHNIIDQALSGLIKCLKSDNRVLRKESSWALSNIAAGSFEHKKLIFASEATPVLIRLV 405
Query: 379 QTAEFDIKKEAAWAISN---ATSGGSH------DQIKYLVSEGCIKPLCDLLICPDIRIV 429
+ +FDI++EAA+ + N +G + + +V G + L+ D+
Sbjct: 406 TSMQFDIRREAAYTLGNLCVVPTGNCELPKIIVEHLVAIVDGGALPGFIHLVRSADVDTA 465
Query: 430 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 489
+ L+ LE +++ G +K ++++ +G+E +E Q H+N ++ A ++
Sbjct: 466 GLGLQFLELVMR-GYPNKQ--------GPKLVEMEDGIEAMERFQFHENEQMRNMANGLV 516
Query: 490 EAYW 493
+ Y+
Sbjct: 517 DEYF 520
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,055,314
Number of extensions: 611147
Number of successful extensions: 1657
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1538
Number of HSP's successfully gapped: 6
Length of query: 526
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 421
Effective length of database: 11,553,331
Effective search space: 4863952351
Effective search space used: 4863952351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)