BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0248400 Os01g0248400|AK072762
(414 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0248400 Similar to Isocitrate dehydrogenase (Fragment) 859 0.0
Os01g0654500 Similar to NADP-isocitrate dehydrogenase 747 0.0
Os05g0573200 Similar to Isocitrate dehydrogenase (Fragment) 744 0.0
Os04g0508200 Isocitrate dehydrogenase NADP-dependent, eukar... 661 0.0
AK107325 552 e-157
>Os01g0248400 Similar to Isocitrate dehydrogenase (Fragment)
Length = 414
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTI 60
MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTI
Sbjct: 1 MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTI 60
Query: 61 ESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIP 120
ESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIP
Sbjct: 61 ESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIP 120
Query: 121 RLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVAL 180
RLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVAL
Sbjct: 121 RLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVAL 180
Query: 181 SMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFD 240
SMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFD
Sbjct: 181 SMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFD 240
Query: 241 DAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDG 300
DAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDG
Sbjct: 241 DAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDG 300
Query: 301 RTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLE 360
RTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLE
Sbjct: 301 RTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLE 360
Query: 361 AACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRLSVTSKL 414
AACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRLSVTSKL
Sbjct: 361 AACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRLSVTSKL 414
>Os01g0654500 Similar to NADP-isocitrate dehydrogenase
Length = 412
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/410 (86%), Positives = 381/410 (92%), Gaps = 1/410 (0%)
Query: 1 MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTI 60
MAFEKI VANP+VEMDGDEMTR+ W+ IKDKLIFPFLDLDIKYYDLG+ +RDAT DKVT+
Sbjct: 1 MAFEKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTV 60
Query: 61 ESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIP 120
E+AEATLKYNVAIKCATITPDE RVKEFNL MWKSPNGTIRNI+NGTVFREPIICKN+P
Sbjct: 61 EAAEATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVP 120
Query: 121 RLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVAL 180
RLVPGW KPICIGRHAFGDQYRATD V+KGPGKLKLVF+G++EQI+L+VFNFTGAGGVAL
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVAL 180
Query: 181 SMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFD 240
SMYNTDESI AFAEASM AY+K+WPLYLSTKNTILKKYDGRFKDIFQE YE W++KF+
Sbjct: 181 SMYNTDESIRAFAEASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKFE 240
Query: 241 DAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDG 300
AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSD +AQGFGSLGLMTSVLVCPDG
Sbjct: 241 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 300
Query: 301 RTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLE 360
+TIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAWT GL HRAKLDDN RLLDF KLE
Sbjct: 301 KTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLDFALKLE 360
Query: 361 AACVGTVESGKMTKDLALLVHG-PNVSRDKYLNTVEFIDAVAEDLRTRLS 409
AACVGTVESGKMTKDLALL+HG NV+R YLNT EFIDAVA +LR+RL+
Sbjct: 361 AACVGTVESGKMTKDLALLIHGSSNVTRSHYLNTEEFIDAVAAELRSRLA 410
>Os05g0573200 Similar to Isocitrate dehydrogenase (Fragment)
Length = 412
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/410 (85%), Positives = 380/410 (92%), Gaps = 1/410 (0%)
Query: 1 MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTI 60
MA KI VANP+VEMDGDEMTRV WK IKDKLIFPFL+LDIKY+DLGLP RD T DKVT+
Sbjct: 1 MASTKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTV 60
Query: 61 ESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIP 120
E+AEATLKYNVAIKCATITPDE RVKEF+L +MWKSPNGTIRNILNGTVFREPIICKNIP
Sbjct: 61 EAAEATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIP 120
Query: 121 RLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVAL 180
RLVPGW KPICIGRHAFGDQYRATD VIKGPGKLKLV++G++E+IEL+VFNFTGAGGVA
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQ 180
Query: 181 SMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFD 240
SMYNTDESI +FAEASM AY+K+WPLYLSTKNTILKKYDGRFKDIFQE YE +W++KF+
Sbjct: 181 SMYNTDESIRSFAEASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFE 240
Query: 241 DAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDG 300
AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSD +AQGFGSLGLMTSVLVCPDG
Sbjct: 241 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 300
Query: 301 RTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLE 360
+TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWT GL HRAKLDDN RLLDF QKLE
Sbjct: 301 KTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLDFTQKLE 360
Query: 361 AACVGTVESGKMTKDLALLVHG-PNVSRDKYLNTVEFIDAVAEDLRTRLS 409
AAC+G VESGKMTKDLALLVHG NV+R YLNT EFIDAVA++LR+RL+
Sbjct: 361 AACIGAVESGKMTKDLALLVHGSSNVTRSHYLNTEEFIDAVADELRSRLA 410
>Os04g0508200 Isocitrate dehydrogenase NADP-dependent, eukaryotic family protein
Length = 478
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/411 (77%), Positives = 364/411 (88%), Gaps = 4/411 (0%)
Query: 4 EKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESA 63
+I V NP+VEMDGDEMTRVIWK IKDKLIFP+L+LD+KY+DLGL NRDAT DKVT+ESA
Sbjct: 68 HRIKVHNPIVEMDGDEMTRVIWKMIKDKLIFPYLELDVKYFDLGLLNRDATDDKVTVESA 127
Query: 64 EATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIPRLV 123
EATL+YNVA+KCATITPDE RVKEF L +MW+SPNGTIRNILNGTVFREPI+CKN+PR++
Sbjct: 128 EATLEYNVAVKCATITPDETRVKEFKLKSMWRSPNGTIRNILNGTVFREPILCKNVPRIL 187
Query: 124 PGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVF--DGREEQIELDVFNFTGAGGVALS 181
GW KPICIGRHAFGDQYRATDT+I GPGKLK+VF DG E +EL+V+NF G G VALS
Sbjct: 188 SGWKKPICIGRHAFGDQYRATDTIINGPGKLKMVFVPDG-AEPVELNVYNFKGPG-VALS 245
Query: 182 MYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFDD 241
MYN DESI AFAE+SM MA K+WPLYLSTKNTILKKYDGRFKDIFQE YE KW+ KF++
Sbjct: 246 MYNVDESIRAFAESSMAMALSKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEKWKEKFEE 305
Query: 242 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDGR 301
IWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSD +AQGFGSLGLM+SVL+ DG+
Sbjct: 306 NSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMSSVLLSSDGK 365
Query: 302 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLEA 361
T+EAEAAHGTVTRH+R+HQKG ETSTNSIASIFAWT GL HRAKLD N RLLDF +KLE+
Sbjct: 366 TLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNDRLLDFTKKLES 425
Query: 362 ACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRLSVTS 412
AC+ TVESGKMTKDLALL+HGP V+R+ YLNT EFIDAVA+ LR ++ + +
Sbjct: 426 ACIETVESGKMTKDLALLIHGPKVTREFYLNTEEFIDAVAQQLREKIQIPA 476
>AK107325
Length = 429
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/408 (63%), Positives = 316/408 (77%), Gaps = 4/408 (0%)
Query: 5 KIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAE 64
KI VANPVVE+DGDEMTR+IW+ I++ LI PFLD+D+KYYDLG+ +RDAT D+VT+++AE
Sbjct: 14 KIKVANPVVELDGDEMTRIIWQKIREDLILPFLDIDLKYYDLGIEHRDATDDQVTVDAAE 73
Query: 65 ATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIPRLVP 124
A KY V +KCATITPDE RVKEF L MW SPNGTIRNIL GTVFR PI+ ++PR VP
Sbjct: 74 AIKKYRVGVKCATITPDEARVKEFGLKKMWLSPNGTIRNILGGTVFRAPIVLDDLPRPVP 133
Query: 125 GWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVF---DGREEQIELDVFNFTGAGGVALS 181
GW KPI IGRHAFGDQYR + + PGK + F DG Q D+FNF AGGV L+
Sbjct: 134 GWTKPIIIGRHAFGDQYRCQNFAVDKPGKFTMQFTPEDGSAPQT-WDIFNFPDAGGVGLA 192
Query: 182 MYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFDD 241
MYNT ESI FA A MA +K+ PLYLSTKNTILK YDGRFKDIF+ YET ++ F+
Sbjct: 193 MYNTTESITGFAHACFKMALEKKVPLYLSTKNTILKAYDGRFKDIFENLYETVYKKDFEA 252
Query: 242 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDGR 301
G W+ HRLIDD+VA A+KS+GG+VWACKNYDGDVQSD++AQG+GSLG+MTS L+ PDG+
Sbjct: 253 QGTWFNHRLIDDLVAQAIKSDGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSELITPDGQ 312
Query: 302 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLEA 361
IE+EAAHGTVTRHYR HQKG ETSTNS+ASI+AWT GL R KLD N L+ F LE
Sbjct: 313 IIESEAAHGTVTRHYREHQKGNETSTNSVASIYAWTRGLAFRGKLDKNDELVYFANALEE 372
Query: 362 ACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRLS 409
AC+ + +GKMTKDLAL+ HG + R+ Y+ T+E+ID VA+ L+ +LS
Sbjct: 373 ACLDAISAGKMTKDLALIYHGKQMKREHYVTTMEYIDEVAKILKHKLS 420
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,689,745
Number of extensions: 633027
Number of successful extensions: 1242
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1237
Number of HSP's successfully gapped: 5
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)