Os01g0248400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isocitrate dehydrogenase (Fragment).
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Os01g0248400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isocitrate dehydrogenase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.78 | 0.252 | 9.45 | -1.47 | 1.1 | 0.0628 | -0.0711 | 2.44 | -0.427 | 6.74 | 20.13 | 1376 | -- | -- |
| 30.8 | 0.26 | 9.42 | -1.33 | 1.12 | -0.75 | -0.201 | -- | -0.401 | 6.55 | 20.13 | 1376 | -- | -- |
| 28.78 | 0.25 | 9.45 | -1.48 | 1.1 | 0.0426 | -- | 2.36 | -0.429 | 6.74 | 20.37 | 1352 | -- | -- |
| 30.9 | 0.261 | 9.42 | -1.33 | 1.12 | -0.752 | -- | -- | -0.401 | 6.57 | 20.13 | 1376 | -- | -- |
| 92.18 | 0.447 | 9.48 | -1.5 | -- | -0.0847 | -- | 2.43 | -0.423 | -- | 20.42 | 1440 | -- | -- |
| 34.32 | 0.275 | 9.4 | -1.21 | 1.11 | -- | -0.228 | -- | -0.354 | 6.72 | -- | -- | -- | -- |
| 34.45 | 0.275 | 9.4 | -1.22 | 1.11 | -- | -- | -- | -0.353 | 6.74 | -- | -- | -- | -- |
| 93.95 | 0.451 | 9.45 | -1.43 | -- | -0.983 | -- | -- | -0.409 | -- | 15.04 | 2950 | -- | -- |
| 70.76 | 0.392 | 9.36 | -- | 1.01 | 0.46 | -- | -- | -0.153 | 7.17 | 31.71 | 199 | -- | -- |
| 99.13 | 0.465 | 9.43 | -1.19 | -- | -- | -- | -- | -0.331 | -- | -- | -- | -- | -- |
| 73.51 | 0.401 | 9.37 | -- | 1.1 | -- | -- | -- | -0.217 | 6.81 | -- | -- | -- | -- |
| 110.59 | 0.49 | 9.36 | -- | -- | 1.26 | -- | -- | -0.0501 | -- | 36.55 | 455 | -- | -- |
| 136.62 | 0.546 | 9.4 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.63 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 5 | 27.60 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 14 |
| 8 | 27.94 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 12 | 28.09 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 14 | 28.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 15 | 28.10 | radiation | 20 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 22 | 28.17 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 8 |
| 27 | 28.21 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 34 | 28.26 | temperature | 15 | 90 | > th | dose independent | rect. | 19 | 14 |
| 36 | 28.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 45 | 28.31 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 46 | 28.32 | radiation | 1 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 47 | 28.32 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 99 | 28.57 | radiation | 10 | 270 | < th | dose independent | rect. | 12 | 20 |
| 102 | 28.58 | humidity | 80 | 14400 | > th | dose dependent | sin | 10 | NA |
| 130 | 28.64 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 7 |
| 146 | 28.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 150 | 28.67 | humidity | 80 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 170 | 28.71 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 177 | 28.72 | temperature | 20 | 1440 | < th | dose dependent | rect. | 24 | 20 |
| 194 | 28.75 | humidity | 80 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 247 | 28.81 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 269 | 28.82 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 276 | 28.83 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 19 | 14 |
| 280 | 28.83 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 290 | 28.84 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 385 | 28.92 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 410 | 28.94 | temperature | 20 | 1440 | < th | dose dependent | sin | 14 | NA |
| 453 | 28.98 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 464 | 28.99 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 554 | 29.05 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 14 |
| 566 | 29.06 | temperature | 20 | 1440 | < th | dose dependent | sin | 3 | NA |
| 582 | 29.08 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 3 |
| 586 | 29.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 625 | 29.11 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 13 |
| 716 | 29.20 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 779 | 29.25 | temperature | 15 | 270 | > th | dose independent | rect. | 11 | 11 |
| 824 | 29.29 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 867 | 29.32 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 10 |
| 889 | 29.33 | wind | 5 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 903 | 29.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 905 | 29.34 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 17 |
| 907 | 29.34 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 908 | 29.34 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 22 | 7 |
| 917 | 29.35 | radiation | 10 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 930 | 29.36 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 991 | 29.40 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 5 |