BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0248400 Os01g0248400|AK072762
         (414 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65930.1  | chr1:24539088-24541861 FORWARD LENGTH=411          729   0.0  
AT1G54340.1  | chr1:20283520-20286506 FORWARD LENGTH=417          707   0.0  
AT5G14590.1  | chr5:4703533-4706627 REVERSE LENGTH=486            678   0.0  

>AT1G65930.1 | chr1:24539088-24541861 FORWARD LENGTH=411
          Length = 410

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/410 (83%), Positives = 374/410 (91%)

Query: 1   MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTI 60
           MAFEKI VANP+VEMDGDEMTRVIWK IKDKLI PF++LDIKY+DLGLP+RDAT DKVTI
Sbjct: 1   MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTI 60

Query: 61  ESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIP 120
           ESAEAT KYNVAIKCATITPDEGRV EF L  MW+SPNGTIRNILNGTVFREPIICKN+P
Sbjct: 61  ESAEATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVP 120

Query: 121 RLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVAL 180
           +LVPGW KPICIGRHAFGDQYRATD VIKGPGKL + F+G++ + E +VF FTG GGVA+
Sbjct: 121 KLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLTMTFEGKDGKTETEVFTFTGEGGVAM 180

Query: 181 SMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFD 240
           +MYNTDESI AFA+ASMN AY+K+WPLYLSTKNTILKKYDGRFKDIFQE YE  W++K+D
Sbjct: 181 AMYNTDESIRAFADASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKYD 240

Query: 241 DAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDG 300
            AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSD +AQGFGSLGLMTSVLVCPDG
Sbjct: 241 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG 300

Query: 301 RTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLE 360
           +TIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAWT GL HRAKLDDN +LLDF +KLE
Sbjct: 301 KTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLE 360

Query: 361 AACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRLSV 410
           AACVGTVESGKMTKDLAL++HG  +SRD YLNT EFIDAVA +L+ RL+ 
Sbjct: 361 AACVGTVESGKMTKDLALIIHGSKLSRDTYLNTEEFIDAVAAELKERLNA 410



>AT1G54340.1 | chr1:20283520-20286506 FORWARD LENGTH=417
          Length = 416

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/410 (81%), Positives = 368/410 (89%), Gaps = 3/410 (0%)

Query: 1   MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTI 60
           M FEKI V NPVVEMDGDEMTRVIWK+IKDKLIFPFL+LDIKY+DLGLPNRD T DKVTI
Sbjct: 1   MEFEKIKVINPVVEMDGDEMTRVIWKFIKDKLIFPFLELDIKYFDLGLPNRDFTDDKVTI 60

Query: 61  ESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIP 120
           E+AEATLKYNVAIKCATITPDE RV+EF L  MW+SPNGTIRNILNGTVFREPIIC+NIP
Sbjct: 61  ETAEATLKYNVAIKCATITPDEARVREFGLKKMWRSPNGTIRNILNGTVFREPIICRNIP 120

Query: 121 RLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFD--GREEQIELDVFNFTGAGGV 178
           RLVPGW KPICIGRHAFGDQYRATD ++  PGKLKLVF+  G  ++ E +VFNFTG GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDLIVNEPGKLKLVFEPSGSSQKTEFEVFNFTG-GGV 179

Query: 179 ALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAK 238
           AL+MYNTDESI AFAE+SM  AYQK+WPLYLSTKNTILK YDGRFKDIFQE YE  WR+K
Sbjct: 180 ALAMYNTDESIRAFAESSMYTAYQKKWPLYLSTKNTILKIYDGRFKDIFQEVYEANWRSK 239

Query: 239 FDDAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCP 298
           ++ AGIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSD +AQG+GSLG+MTSVLVCP
Sbjct: 240 YEAAGIWYEHRLIDDMVAYAMKSEGGYVWACKNYDGDVQSDFLAQGYGSLGMMTSVLVCP 299

Query: 299 DGRTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQK 358
           DG+TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+ GL HRAKLD N  LL + +K
Sbjct: 300 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDSNAALLSYTEK 359

Query: 359 LEAACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRL 408
           LEAAC+GTVESGKMTKDLALL+HG  V RD+Y+NT EFIDAVA +L+ RL
Sbjct: 360 LEAACMGTVESGKMTKDLALLIHGAKVRRDQYVNTEEFIDAVAWELKRRL 409



>AT5G14590.1 | chr5:4703533-4706627 REVERSE LENGTH=486
          Length = 485

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/408 (78%), Positives = 362/408 (88%), Gaps = 5/408 (1%)

Query: 4   EKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESA 63
           ++I V NP+VEMDGDEMTRVIW  IK+KLI P+LDLDIKY+DLG+ NRDAT DKVT+ESA
Sbjct: 74  DRIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFDLGILNRDATDDKVTVESA 133

Query: 64  EATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKNIPRLV 123
           EA LKYNVAIKCATITPDEGRVKEF L +MW+SPNGTIRNIL+GTVFREPI+C NIPRLV
Sbjct: 134 EAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFREPIMCSNIPRLV 193

Query: 124 PGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVF---DGREEQIELDVFNFTGAGGVAL 180
           PGW KPICIGRHAFGDQYRATDTVIKGPGKLK+VF   DG    +ELDV++F G G VAL
Sbjct: 194 PGWEKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDG-NAPVELDVYDFKGPG-VAL 251

Query: 181 SMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAKFD 240
           +MYN DESI AFAE+SM MA  K+WPLYLSTKNTILKKYDGRFKDIFQE YE  W+ KF+
Sbjct: 252 AMYNVDESIRAFAESSMAMALTKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKQKFE 311

Query: 241 DAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDG 300
           +  IWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDL+AQGFGSLGLMTSVL+  DG
Sbjct: 312 EHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSADG 371

Query: 301 RTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQKLE 360
           +T+E+EAAHGTVTRH+R+HQKG ETSTNSIASIFAWT GL HRAKLD N++L+DFV+KLE
Sbjct: 372 KTLESEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEKLMDFVKKLE 431

Query: 361 AACVGTVESGKMTKDLALLVHGPNVSRDKYLNTVEFIDAVAEDLRTRL 408
           ++CV TVE+GKMTKDLALL+HGP VSRD +LNT EFIDAVA  L+T+ 
Sbjct: 432 SSCVNTVETGKMTKDLALLIHGPKVSRDLFLNTEEFIDAVASKLKTQF 479



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,422,550
Number of extensions: 410144
Number of successful extensions: 829
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 825
Number of HSP's successfully gapped: 3
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)