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Os01g0654500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NADP-isocitrate dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0174) R2 : 0.596
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.17 (0.0457) R2dC : 0.58 R2C : 0.565
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.191 (0.0367) R2dN8 : 0.0309 R2N8 : 0.0157
σ : 0.329
deviance : 49.39
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.29 0.271 12.9 0.324 1.26 0.519 -1.2 -0.379 0.222 16.9 16.98 10 -- --
34.02 0.272 12.9 0.346 1.25 0.503 -1.09 -- 0.218 17 16.98 9 -- --
36.77 0.282 12.9 0.331 1.25 0.519 -- -0.184 0.226 16.9 16.94 9 -- --
36.92 0.283 12.9 0.339 1.25 0.528 -- -- 0.217 16.8 16.94 9 -- --
113.92 0.497 12.9 0.26 -- 0.343 -- -0.139 0.192 -- 39.72 14 -- --
43.36 0.309 12.9 0.29 1.18 -- -1.21 -- 0.229 18.3 -- -- -- --
46.96 0.321 12.9 0.303 1.17 -- -- -- 0.224 18.3 -- -- -- --
114 0.497 12.9 0.26 -- 0.34 -- -- 0.193 -- 39.72 14 -- --
39.96 0.294 12.9 -- 1.24 0.5 -- -- 0.187 16.9 16.97 9 -- --
118.02 0.508 12.9 0.272 -- -- -- -- 0.199 -- -- -- -- --
49.39 0.329 12.9 -- 1.17 -- -- -- 0.191 18.3 -- -- -- --
115.77 0.501 12.9 -- -- 0.347 -- -- 0.164 -- 39.47 14 -- --
119.97 0.511 12.9 -- -- -- -- -- 0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.34 radiation 20.0 270 < th dose independent rect. 22 10
2 26.66 radiation 40.0 270 < th dose dependent rect. 22 10
3 26.78 temperature 10.0 270 > th dose dependent rect. 18 18
4 26.84 temperature 20.0 270 > th dose independent rect. 12 6
6 27.20 wind 9.0 270 < th dose independent rect. 7 15
9 27.37 humidity 70.0 270 > th dose independent rect. 22 10
10 27.38 precipitation 0.1 270 < th dose independent rect. 12 19
11 27.38 precipitation 0.1 270 < th dose dependent rect. 12 19
12 27.40 wind 9.0 270 < th dose independent rect. 7 5
14 27.42 precipitation 0.1 270 < th dose independent rect. 7 5
15 27.42 precipitation 0.1 270 < th dose dependent rect. 7 5
16 27.44 temperature 10.0 270 > th dose independent rect. 7 5
17 27.44 atmosphere 995.0 270 > th dose independent rect. 7 5
18 27.44 atmosphere 1015.0 270 < th dose independent rect. 7 5
19 27.44 temperature 10.0 270 > th dose independent rect. 12 19
20 27.45 humidity 50.0 270 > th dose independent rect. 7 5
24 27.46 temperature 10.0 270 > th dose independent rect. 22 9
25 27.46 temperature 30.0 270 < th dose independent rect. 22 9
26 27.46 humidity 50.0 270 > th dose independent rect. 22 9
28 27.46 atmosphere 995.0 270 > th dose independent rect. 22 9
30 27.46 temperature 10.0 270 > th dose independent rect. 7 15
31 27.47 wind 9.0 270 < th dose independent rect. 22 9
33 27.54 wind 9.0 270 < th dose independent rect. 18 18
34 27.56 precipitation 0.1 270 < th dose independent rect. 12 6
41 27.56 precipitation 0.1 270 < th dose dependent rect. 12 6
42 27.57 radiation 1.0 270 > th dose independent rect. 7 5
44 27.63 temperature 10.0 270 > th dose independent rect. 12 6
46 27.63 atmosphere 1010.0 270 < th dose independent rect. 12 6
48 27.63 temperature 10.0 270 > th dose independent rect. 18 18
49 27.67 precipitation 0.1 270 < th dose independent rect. 22 9
50 27.67 precipitation 0.1 270 < th dose dependent rect. 22 9
52 27.68 wind 1.0 270 > th dose independent rect. 7 5
53 27.69 atmosphere 995.0 270 > th dose independent rect. 18 18
55 27.74 precipitation 0.1 270 < th dose independent rect. 18 18
56 27.74 precipitation 0.1 270 < th dose dependent rect. 18 18
57 27.77 humidity 50.0 270 > th dose independent rect. 18 18
58 27.78 temperature 10.0 270 > th dose dependent rect. 7 5
59 27.81 atmosphere 995.0 270 > th dose independent rect. 12 19
63 27.97 wind 1.0 270 > th dose independent rect. 8 14
64 27.97 wind 9.0 270 < th dose independent rect. 12 19
65 27.99 atmosphere 995.0 270 > th dose independent rect. 12 6
66 27.99 atmosphere 1015.0 270 < th dose independent rect. 7 15
67 28.03 precipitation 0.1 270 < th dose independent rect. 7 15
68 28.03 precipitation 0.1 270 < th dose dependent rect. 7 15
69 28.04 wind 1.0 270 > th dose independent rect. 12 6
70 28.06 humidity 90.0 270 < th dose independent rect. 12 6
72 28.09 wind 9.0 270 < th dose independent rect. 12 6
76 28.16 wind 1.0 270 > th dose independent rect. 8 3
77 28.16 humidity 50.0 270 > th dose independent rect. 8 3
81 28.19 precipitation 0.1 270 < th dose independent rect. 8 3
82 28.19 precipitation 0.1 270 < th dose independent rect. 11 21
83 28.19 precipitation 0.1 270 < th dose dependent rect. 8 3
84 28.19 precipitation 0.1 270 < th dose dependent rect. 11 21
85 28.20 wind 9.0 270 < th dose independent rect. 8 3
86 28.20 temperature 10.0 270 > th dose independent rect. 8 3
87 28.20 atmosphere 995.0 270 > th dose independent rect. 8 3
88 28.20 atmosphere 1015.0 270 < th dose independent rect. 8 3
89 28.20 temperature 10.0 270 > th dose independent rect. 11 21
90 28.21 temperature 10.0 270 > th dose dependent rect. 8 3
131 28.44 temperature 10.0 10 > th dose dependent rect. 20 18
141 28.49 radiation 1.0 270 > th dose independent rect. 12 18
145 28.55 temperature 10.0 270 > th dose dependent rect. 12 6
146 28.56 humidity 50.0 270 > th dose independent rect. 7 15
170 28.83 atmosphere 1015.0 270 < th dose independent rect. 18 18
191 28.94 radiation 40.0 270 < th dose independent rect. 12 5
218 29.00 humidity 50.0 270 > th dose dependent rect. 22 9
226 29.05 wind 9.0 270 < th dose independent rect. 11 21
253 29.21 radiation 40.0 90 < th dose independent rect. 13 19
254 29.22 radiation 1.0 270 > th dose independent rect. 12 7
277 29.27 humidity 50.0 270 > th dose independent rect. 17 10
282 29.28 radiation 1.0 270 > th dose independent rect. 13 4
287 29.28 wind 1.0 270 > th dose independent rect. 12 19
311 29.33 wind 9.0 270 < th dose independent rect. 17 10
312 29.33 radiation 40.0 10 < th dose independent rect. 14 18
329 29.37 radiation 1.0 90 < th dose dependent sin 13 NA
335 29.41 atmosphere 1015.0 270 < th dose independent rect. 22 9
345 29.47 radiation 40.0 270 < th dose dependent rect. 17 10
348 29.49 atmosphere 995.0 270 > th dose independent rect. 7 15
354 29.50 temperature 10.0 270 > th dose independent rect. 17 10
355 29.50 radiation 20.0 270 < th dose independent rect. 17 10
358 29.50 temperature 10.0 270 > th dose independent rect. 3 14
359 29.50 atmosphere 1015.0 270 < th dose independent rect. 3 14
376 29.54 radiation 1.0 10 > th dose independent rect. 8 6
378 29.55 radiation 1.0 90 < th dose independent sin 13 NA
381 29.56 radiation 1.0 90 > th dose independent sin 13 NA
391 29.57 temperature 10.0 10 > th dose dependent rect. 8 6
393 29.58 radiation 40.0 10 < th dose independent rect. 13 7
422 29.64 wind 1.0 270 > th dose independent rect. 17 10
430 29.66 temperature 15.0 10 > th dose independent rect. 20 18
442 29.73 precipitation 0.1 270 < th dose independent rect. 3 14
443 29.73 precipitation 0.1 270 < th dose dependent rect. 3 14
465 29.81 temperature 20.0 10 > th dose independent rect. 14 6
477 29.84 wind 1.0 10 > th dose independent rect. 8 6
486 29.88 temperature 10.0 10 > th dose independent rect. 8 6
488 29.88 atmosphere 995.0 10 > th dose independent rect. 8 6
489 29.88 atmosphere 1015.0 10 < th dose independent rect. 8 6
490 29.88 precipitation 0.1 10 < th dose independent rect. 8 6
491 29.88 temperature 10.0 10 > th dose independent rect. 14 18
493 29.88 precipitation 0.1 10 < th dose dependent rect. 8 6
523 29.97 wind 9.0 10 < th dose independent rect. 8 6
540 30.02 atmosphere 1015.0 270 < th dose dependent rect. 13 4
552 30.04 atmosphere 995.0 270 > th dose independent rect. 17 10
553 30.04 precipitation 0.1 270 < th dose independent rect. 17 10
555 30.04 precipitation 0.1 270 < th dose dependent rect. 17 10
578 30.10 atmosphere 1015.0 270 < th dose independent rect. 12 19
584 30.11 atmosphere 995.0 10 > th dose independent rect. 14 18
619 30.17 precipitation 0.1 10 < th dose independent rect. 14 6
621 30.17 precipitation 0.1 10 < th dose dependent rect. 14 6
627 30.21 atmosphere 995.0 270 > th dose independent rect. 2 15
668 30.31 temperature 10.0 10 > th dose independent rect. 14 6
670 30.31 atmosphere 1010.0 10 < th dose independent rect. 14 6
675 30.31 atmosphere 995.0 10 > th dose independent rect. 20 18
677 30.32 radiation 1.0 270 > th dose independent rect. 4 8
689 30.32 wind 9.0 10 < th dose independent rect. 20 18
702 30.34 temperature 10.0 1440 > th dose independent rect. 9 6
706 30.34 temperature 10.0 1440 > th dose independent rect. 15 18
721 30.37 wind 9.0 10 < th dose independent rect. 14 18
733 30.39 wind 1.0 10 > th dose independent rect. 14 6
738 30.40 temperature 10.0 10 > th dose dependent rect. 14 6
739 30.40 atmosphere 1015.0 270 < th dose dependent rect. 12 6
773 30.49 wind 9.0 270 < th dose dependent rect. 7 5
774 30.49 wind 1.0 270 > th dose dependent rect. 12 6
783 30.52 humidity 90.0 10 < th dose independent rect. 14 6
798 30.55 temperature 30.0 270 < th dose independent rect. 17 9
799 30.56 wind 9.0 270 < th dose independent rect. 2 15
836 30.61 wind 1.0 270 > th dose independent rect. 18 18
859 30.63 atmosphere 995.0 10 > th dose independent rect. 14 6
913 30.74 wind 9.0 10 < th dose independent rect. 14 6
941 30.79 humidity 90.0 270 < th dose independent rect. 7 5
947 30.79 precipitation 0.1 10 < th dose independent rect. 20 18
949 30.79 precipitation 0.1 10 < th dose dependent rect. 20 18
985 30.90 radiation 20.0 10 < th dose independent rect. 1 17