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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0573200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Isocitrate dehydrogenase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0194) R2 : 0.00183
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0375 (0.0409) R2dN8 : 0.00237 R2N8 : 0.00183
σ : 0.366
deviance : 61.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.77 0.351 3.28 0.128 0.227 -0.0735 -0.319 -1.29 -0.0321 6.03 70.3 5900 -- --
57.6 0.353 3.29 0.0823 0.233 -0.199 -0.473 -- -0.108 6.17 85.98 7305 -- --
55.98 0.348 3.28 0.145 0.229 -0.0604 -- -1.25 -0.0272 6.09 71.17 6337 -- --
57.81 0.354 3.29 0.0785 0.234 -0.195 -- -- -0.119 5.96 85.98 7294 -- --
58.41 0.356 3.28 0.137 -- 0.0374 -- -1.35 -0.00721 -- 70.25 6409 -- --
58.49 0.359 3.28 0.0469 0.23 -- -0.349 -- -0.0384 5.88 -- -- -- --
58.78 0.359 3.28 0.0444 0.228 -- -- -- -0.037 5.99 -- -- -- --
60.47 0.362 3.3 0.092 -- -0.231 -- -- -0.131 -- 85.96 6981 -- --
57.97 0.355 3.29 -- 0.231 -0.193 -- -- -0.125 5.95 86 7304 -- --
61.47 0.366 3.28 0.0511 -- -- -- -- -0.0318 -- -- -- -- --
58.83 0.359 3.28 -- 0.229 -- -- -- -0.0419 5.98 -- -- -- --
60.68 0.363 3.3 -- -- -0.209 -- -- -0.132 -- 85.81 6981 -- --
61.54 0.366 3.28 -- -- -- -- -- -0.0375 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.84 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 50.95 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 51.01 radiation 1.0 43200 < th dose dependent rect. 3 1
6 51.31 radiation 1.0 4320 < th dose dependent rect. 3 1
14 51.39 wind 9.0 1440 < th dose independent rect. 3 1
15 51.39 temperature 10.0 1440 > th dose independent rect. 3 1
18 51.39 temperature 30.0 1440 < th dose independent rect. 3 1
22 51.39 humidity 50.0 1440 > th dose independent rect. 3 1
31 51.39 atmosphere 995.0 1440 > th dose independent rect. 3 1
32 51.39 radiation 1.0 1440 < th dose independent rect. 3 1
52 51.39 temperature 10.0 1440 > th dose independent rect. 4 23
67 51.49 atmosphere 1005.0 10 > th dose dependent rect. 2 2
69 51.54 temperature 20.0 30 > th dose dependent rect. 2 1
71 51.58 temperature 25.0 90 > th dose independent rect. 1 1
73 51.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
77 51.61 wind 3.0 30 < th dose independent rect. 2 1
79 51.61 wind 3.0 30 < th dose dependent rect. 2 1
91 51.68 temperature 10.0 30 > th dose independent rect. 2 1
93 51.68 temperature 25.0 30 < th dose independent rect. 2 1
95 51.68 humidity 50.0 30 > th dose independent rect. 2 1
100 51.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
102 51.68 radiation 1.0 30 < th dose independent rect. 2 1
107 51.68 precipitation 0.1 30 < th dose independent rect. 2 1
108 51.68 temperature 10.0 30 > th dose independent rect. 3 23
109 51.68 humidity 50.0 30 > th dose dependent rect. 2 1
112 51.68 radiation 1.0 30 < th dose dependent rect. 2 1
117 51.68 precipitation 0.1 30 < th dose dependent rect. 2 1
123 51.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
125 51.87 temperature 30.0 30 < th dose dependent rect. 2 1
126 51.92 wind 1.0 30 > th dose independent rect. 2 1
134 52.05 precipitation 0.1 30 < th dose independent rect. 3 23
135 52.05 precipitation 0.1 30 < th dose dependent rect. 3 23
182 52.67 wind 9.0 30 < th dose independent rect. 3 23
188 53.05 humidity 50.0 30 > th dose independent rect. 3 23
212 53.77 radiation 10.0 30 > th dose independent rect. 7 1
213 53.79 humidity 90.0 90 < th dose independent rect. 2 1
214 53.85 humidity 80.0 10 < th dose independent rect. 6 2
220 54.09 humidity 80.0 10 < th dose independent rect. 23 9
260 54.22 radiation 10.0 30 < th dose dependent rect. 3 23
265 54.26 humidity 90.0 90 < th dose independent rect. 1 7
272 54.39 radiation 10.0 10 > th dose independent rect. 16 16
293 54.67 atmosphere 995.0 720 > th dose independent rect. 23 16
294 54.68 humidity 80.0 14400 < th dose dependent rect. 3 6
301 54.75 temperature 30.0 30 < th dose independent rect. 3 23
316 54.93 atmosphere 995.0 720 > th dose independent rect. 7 8
325 55.01 radiation 10.0 30 < th dose independent rect. 3 23
333 55.18 humidity 70.0 14400 > th dose independent rect. 8 1
355 55.32 atmosphere 995.0 720 > th dose independent rect. 3 16
357 55.33 humidity 90.0 90 < th dose dependent rect. 1 7
358 55.34 humidity 70.0 14400 > th dose independent rect. 4 5
360 55.34 humidity 70.0 14400 > th dose independent rect. 24 9
365 55.35 humidity 70.0 14400 > th dose independent rect. 6 3
374 55.37 atmosphere 1000.0 720 > th dose independent rect. 3 8
387 55.41 humidity 70.0 14400 < th dose independent rect. 8 1
431 55.51 humidity 90.0 10 < th dose dependent rect. 7 1
437 55.52 precipitation 0.1 720 < th dose independent rect. 15 8
438 55.52 wind 1.0 14400 < th dose dependent rect. 2 1
439 55.52 precipitation 0.1 720 < th dose dependent rect. 15 8
447 55.55 atmosphere 995.0 720 > th dose independent rect. 15 16
452 55.56 wind 9.0 720 < th dose independent rect. 19 8
453 55.56 wind 1.0 10 > th dose independent rect. 8 23
454 55.56 humidity 50.0 14400 > th dose dependent rect. 8 1
455 55.57 precipitation 0.1 720 < th dose independent rect. 19 8
457 55.57 precipitation 0.1 720 < th dose dependent rect. 19 8
463 55.61 temperature 10.0 720 > th dose independent rect. 15 8
464 55.61 temperature 10.0 720 > th dose independent rect. 23 16
468 55.62 wind 7.0 14400 < th dose independent rect. 9 1
481 55.63 wind 3.0 30 < th dose dependent rect. 2 6
492 55.64 humidity 50.0 30 > th dose dependent rect. 3 23
493 55.64 humidity 70.0 30 > th dose dependent rect. 3 23
498 55.68 humidity 70.0 4320 > th dose independent rect. 10 2
501 55.68 precipitation 0.1 720 < th dose independent rect. 15 16
506 55.68 precipitation 0.1 720 < th dose dependent rect. 15 16
508 55.69 wind 9.0 720 < th dose independent rect. 15 16
509 55.69 atmosphere 1015.0 30 < th dose independent rect. 3 23
518 55.71 humidity 70.0 4320 < th dose independent rect. 10 2
521 55.72 temperature 10.0 720 > th dose independent rect. 7 8
522 55.72 atmosphere 1015.0 720 < th dose independent rect. 7 8
523 55.72 temperature 10.0 720 > th dose independent rect. 15 16
533 55.75 temperature 10.0 720 > th dose independent rect. 3 8
535 55.75 temperature 10.0 720 > th dose independent rect. 11 16
539 55.76 humidity 50.0 4320 > th dose dependent rect. 11 2
544 55.77 atmosphere 995.0 10 > th dose independent rect. 8 23
548 55.79 wind 7.0 14400 > th dose independent rect. 9 1
553 55.79 temperature 10.0 720 > th dose independent rect. 19 8
554 55.79 temperature 30.0 720 < th dose independent rect. 19 8
555 55.79 humidity 50.0 720 > th dose independent rect. 19 8
556 55.79 atmosphere 995.0 720 > th dose independent rect. 19 8
557 55.79 radiation 1.0 720 < th dose independent rect. 19 8
562 55.79 temperature 10.0 720 > th dose independent rect. 3 16
567 55.79 radiation 1.0 720 < th dose dependent rect. 19 8
583 55.82 humidity 80.0 4320 < th dose dependent rect. 11 2
588 55.83 humidity 50.0 720 > th dose independent rect. 3 8
597 55.84 wind 1.0 10 < th dose independent rect. 11 16
618 55.86 atmosphere 1005.0 30 > th dose dependent rect. 2 6
624 55.87 humidity 70.0 4320 > th dose independent rect. 8 7
630 55.88 wind 9.0 720 < th dose independent rect. 15 8
631 55.88 precipitation 0.1 720 < th dose independent rect. 11 16
636 55.88 precipitation 0.1 720 < th dose dependent rect. 11 16
638 55.88 atmosphere 995.0 30 > th dose dependent rect. 3 23
644 55.89 precipitation 0.1 720 < th dose independent rect. 7 8
650 55.89 humidity 80.0 720 > th dose dependent rect. 3 1
657 55.89 precipitation 0.1 720 < th dose dependent rect. 7 8
658 55.89 humidity 50.0 4320 > th dose dependent rect. 23 16
672 55.90 humidity 50.0 4320 > th dose dependent rect. 3 12
699 55.92 humidity 70.0 4320 < th dose independent rect. 8 7
700 55.92 wind 1.0 10 < th dose independent rect. 6 21
713 55.92 humidity 90.0 4320 < th dose dependent rect. 23 16
716 55.93 humidity 80.0 14400 < th dose dependent sin 8 NA
717 55.93 humidity 90.0 90 < th dose dependent rect. 2 1
746 55.94 humidity 90.0 4320 < th dose dependent rect. 3 12
758 55.95 wind 9.0 720 < th dose independent rect. 3 8
770 55.95 radiation 1.0 30 > th dose dependent rect. 7 1
788 55.96 humidity 70.0 4320 > th dose independent sin 4 NA
789 55.96 wind 9.0 14400 > th dose independent rect. 1 1
805 55.96 humidity 50.0 4320 > th dose dependent sin 4 NA
808 55.96 wind 9.0 14400 > th dose dependent rect. 1 1
868 55.98 wind 1.0 14400 < th dose independent rect. 2 1
929 55.99 humidity 90.0 4320 < th dose dependent sin 4 NA
960 56.00 humidity 80.0 4320 < th dose dependent rect. 14 1
984 56.01 humidity 70.0 4320 < th dose independent sin 4 NA