Os04g0508200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isocitrate dehydrogenase NADP-dependent, eukaryotic family protein.
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Os04g0508200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isocitrate dehydrogenase NADP-dependent, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.38 | 0.227 | 10.1 | 0.211 | 0.0493 | 0.134 | 0.48 | 1.01 | -0.137 | 14.4 | 70.73 | 5511 | -- | -- |
| 24.12 | 0.229 | 10.1 | 0.2 | 0.0943 | 0.284 | 0.375 | -- | -0.136 | 12.9 | 85 | 900 | -- | -- |
| 23.99 | 0.228 | 10.1 | 0.27 | 0.0516 | 0.124 | -- | 1.19 | -0.129 | 14.8 | 76.01 | 6126 | -- | -- |
| 24.64 | 0.231 | 10.1 | 0.204 | 0.0926 | 0.301 | -- | -- | -0.13 | 10.2 | 85 | 775 | -- | -- |
| 24.1 | 0.229 | 10.1 | 0.262 | -- | 0.15 | -- | 1.14 | -0.144 | -- | 76.3 | 6137 | -- | -- |
| 25.8 | 0.238 | 10.1 | 0.236 | 0.0401 | -- | 0.419 | -- | -0.141 | 14.7 | -- | -- | -- | -- |
| 26.26 | 0.24 | 10.1 | 0.247 | 0.0688 | -- | -- | -- | -0.138 | 17.9 | -- | -- | -- | -- |
| 25.01 | 0.233 | 10.1 | 0.218 | -- | 0.23 | -- | -- | -0.131 | -- | 83.98 | 763 | -- | -- |
| 25.8 | 0.237 | 10.1 | -- | 0.107 | 0.338 | -- | -- | -0.15 | 9.99 | 83.5 | 784 | -- | -- |
| 26.51 | 0.241 | 10.1 | 0.245 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 27.87 | 0.247 | 10.1 | -- | 0.0652 | -- | -- | -- | -0.166 | 18.1 | -- | -- | -- | -- |
| 26.24 | 0.239 | 10.1 | -- | -- | 0.25 | -- | -- | -0.152 | -- | 82 | 780 | -- | -- |
| 28.09 | 0.247 | 10.1 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 21.87 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 12 | 22.41 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 22.41 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 25 | 22.50 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 26 | 22.51 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 32 | 22.54 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 42 | 22.58 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 44 | 22.58 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 47 | 22.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 52 | 22.60 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 54 | 22.61 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 81 | 22.68 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 92 | 22.69 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 93 | 22.69 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 107 | 22.72 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 126 | 22.73 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 138 | 22.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 186 | 22.82 | wind | 3.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 217 | 22.86 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 230 | 22.87 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 265 | 22.90 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 271 | 22.90 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 274 | 22.90 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 9 |
| 310 | 22.93 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 320 | 22.93 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 421 | 23.00 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 430 | 23.01 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 13 |
| 431 | 23.01 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 432 | 23.02 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 486 | 23.06 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 489 | 23.06 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 500 | 23.06 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 504 | 23.06 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 508 | 23.06 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 13 |
| 511 | 23.07 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 544 | 23.09 | wind | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 567 | 23.11 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 608 | 23.13 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 8 |
| 624 | 23.14 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 625 | 23.14 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 660 | 23.16 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 16 |
| 661 | 23.16 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 16 |
| 679 | 23.16 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 16 |
| 733 | 23.19 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 775 | 23.20 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 17 |
| 776 | 23.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 839 | 23.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 846 | 23.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 869 | 23.23 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 893 | 23.24 | wind | 5.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 917 | 23.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 931 | 23.25 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 968 | 23.26 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 981 | 23.26 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |