BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0242900 Os01g0242900|AK071658
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0242900  Conserved hypothetical protein                      152   1e-37
Os05g0564800  Conserved hypothetical protein                       81   3e-16
Os01g0667100  Conserved hypothetical protein                       78   3e-15
Os06g0359400  Conserved hypothetical protein                       65   3e-11

>Os01g0242900 Conserved hypothetical protein
          Length = 156

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 61  DPYYRPRGGYQGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLL 120
           DPYYRPRGGYQGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLL
Sbjct: 61  DPYYRPRGGYQGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLL 120

Query: 121 WCSRVDYREKPGY 133
           WCSRVDYREKPGY
Sbjct: 121 WCSRVDYREKPGY 133



>Os05g0564800 Conserved hypothetical protein
          Length = 127

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 3/74 (4%)

Query: 61  DPYYRPRGGYQGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLL 120
           +PYY    GYQ  P     A  R     RLPCCG+G+GW LFI GFFL AIPWYVGAF+L
Sbjct: 31  EPYYA--QGYQTGPGYGPIAEGRPVRMRRLPCCGLGLGWLLFIAGFFLAAIPWYVGAFIL 88

Query: 121 WCSRV-DYREKPGY 133
            C RV DYREKPGY
Sbjct: 89  ICVRVHDYREKPGY 102



>Os01g0667100 Conserved hypothetical protein
          Length = 185

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 69  GYQGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLLWCSRV-DY 127
           GYQ +         R     RLP CG+G+GWFLFI+GFFL AIPWY+GAF+L C RV DY
Sbjct: 95  GYQAVQGYIPVVEGRPVRMRRLPFCGLGMGWFLFIIGFFLAAIPWYIGAFVLICVRVHDY 154

Query: 128 REKPGY 133
           REKPGY
Sbjct: 155 REKPGY 160



>Os06g0359400 Conserved hypothetical protein
          Length = 156

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 10/62 (16%)

Query: 71  QGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLLWCSRVDYREK 130
           +G+P R+            LP CGIG+GW LF++GFFL A+PWY GAF+L+   +D+REK
Sbjct: 79  EGVPIRE----------PPLPFCGIGLGWILFLLGFFLAALPWYAGAFILFFVALDHREK 128

Query: 131 PG 132
           PG
Sbjct: 129 PG 130



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.155    0.579 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,271,420
Number of extensions: 134593
Number of successful extensions: 431
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)