Os05g0564800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0564800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.03 | 0.244 | 11.6 | -0.566 | 0.465 | -0.838 | -0.199 | -0.274 | -0.0266 | 5.38 | 23.83 | 660 | -- | -- |
| 27.12 | 0.243 | 11.6 | -0.602 | 0.459 | -0.794 | -0.238 | -- | -0.0322 | 5.35 | 23.9 | 648 | -- | -- |
| 27.12 | 0.243 | 11.6 | -0.563 | 0.463 | -0.847 | -- | -0.317 | -0.0246 | 5.42 | 23.8 | 665 | -- | -- |
| 27.26 | 0.243 | 11.6 | -0.602 | 0.46 | -0.795 | -- | -- | -0.0337 | 5.39 | 23.9 | 657 | -- | -- |
| 36.65 | 0.282 | 11.6 | -0.562 | -- | -0.822 | -- | -0.265 | -0.0349 | -- | 25 | 1077 | -- | -- |
| 36.06 | 0.282 | 11.6 | -0.395 | 0.433 | -- | -0.245 | -- | 0.112 | 4.66 | -- | -- | -- | -- |
| 36.21 | 0.282 | 11.6 | -0.393 | 0.431 | -- | -- | -- | 0.114 | 4.67 | -- | -- | -- | -- |
| 36.76 | 0.282 | 11.6 | -0.613 | -- | -0.788 | -- | -- | -0.0443 | -- | 25.2 | 1086 | -- | -- |
| 35.95 | 0.279 | 11.6 | -- | 0.585 | -0.595 | -- | -- | 0.0834 | 4.95 | 38.28 | 365 | -- | -- |
| 46.1 | 0.317 | 11.6 | -0.377 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 40.29 | 0.297 | 11.6 | -- | 0.424 | -- | -- | -- | 0.157 | 4.7 | -- | -- | -- | -- |
| 45.47 | 0.314 | 11.6 | -- | -- | -0.475 | -- | -- | 0.0939 | -- | 33 | 1217 | -- | -- |
| 49.85 | 0.33 | 11.6 | -- | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 3 | 24.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 6 | 24.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 13 | 24.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 22 | 24.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 27 | 24.53 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 65 | 24.73 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 148 | 25.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 292 | 25.92 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 511 | 26.81 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 520 | 26.84 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 530 | 26.88 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 555 | 26.94 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 561 | 26.95 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 574 | 26.99 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 612 | 27.11 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 13 |
| 633 | 27.15 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 697 | 27.25 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 708 | 27.28 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 7 |
| 753 | 27.34 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 825 | 27.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 894 | 27.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 901 | 27.63 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 912 | 27.65 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 938 | 27.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |