BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0564800 Os05g0564800|AK120640
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17080.1 | chr1:5840458-5841536 REVERSE LENGTH=155 95 1e-20
AT1G53560.1 | chr1:19984908-19985960 REVERSE LENGTH=154 84 1e-17
AT1G29970.2 | chr1:10498458-10501311 REVERSE LENGTH=313 60 4e-10
AT3G14595.1 | chr3:4909037-4910226 FORWARD LENGTH=133 48 1e-06
>AT1G17080.1 | chr1:5840458-5841536 REVERSE LENGTH=155
Length = 154
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 56/88 (63%)
Query: 40 TGPGYGPIAEGRPVRMRRLPCCXXXXXXXXFIAGFFLAAIPWYVGAFILICVRVHDYREK 99
T P +G +AEGRPVR RRLPCC FI GFFL AIPWYVG FI++ R DYREK
Sbjct: 67 TVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYREK 126
Query: 100 PGYVACTXXXXXXXXXXPLGLTKGAHVW 127
PGY+ACT LG++KGA W
Sbjct: 127 PGYIACTIAAILATIAVILGVSKGADDW 154
>AT1G53560.1 | chr1:19984908-19985960 REVERSE LENGTH=154
Length = 153
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 46 PIAEGRPVRMRRLPCCXXXXXXXXFIAGFFLAAIPWYVGAFILICVRVHDYREKPGYVAC 105
P+++GRP R RLPCC FI GF L AIPWYVG FIL+C R+ D REKPGYVAC
Sbjct: 72 PVSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARI-DPREKPGYVAC 130
Query: 106 TXXXXXXXXXXPLGLTKGAHVW 127
T G+ G VW
Sbjct: 131 TIAAVVATITIVFGVMGGRGVW 152
>AT1G29970.2 | chr1:10498458-10501311 REVERSE LENGTH=313
Length = 312
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 47 IAEGRPVRMRRLPCCXXXXXXXXFIAGFFLAAIPWYVGAFILICVRVHDYREKPGYVACT 106
+ E RP+ LPCC FI GF IPWY+GAFI++ V D+REK GYVAC+
Sbjct: 79 VVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSV-DHREKAGYVACS 137
>AT3G14595.1 | chr3:4909037-4910226 FORWARD LENGTH=133
Length = 132
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 51 RPVRMRRLPCCXXXXXXXXFIAGFFLAAIPWYVGAFILICVRVHDYREKPGYVACTXXXX 110
RP R CC FI GFF A +PWY+G F+L+ R + RE+PGY+AC
Sbjct: 60 RPTEHGR--CCGIGIGWVLFILGFFFA-LPWYIGFFLLLFSR--NPRERPGYIACAVGAV 114
Query: 111 XXXXXXPLGLTKGAHVW 127
G +G+ VW
Sbjct: 115 FATIIVIFGTVRGSGVW 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.151 0.548
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,572,989
Number of extensions: 42770
Number of successful extensions: 60
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 4
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 105 (45.1 bits)