BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0564800 Os05g0564800|AK120640
         (127 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0564800  Conserved hypothetical protein                      135   6e-33
Os01g0667100  Conserved hypothetical protein                      107   2e-24
Os01g0242900  Conserved hypothetical protein                       71   2e-13

>Os05g0564800 Conserved hypothetical protein
          Length = 127

 Score =  135 bits (341), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 70/88 (79%)

Query: 40  TGPGYGPIAEGRPVRMRRLPCCXXXXXXXXFIAGFFLAAIPWYVGAFILICVRVHDYREK 99
           TGPGYGPIAEGRPVRMRRLPCC        FIAGFFLAAIPWYVGAFILICVRVHDYREK
Sbjct: 40  TGPGYGPIAEGRPVRMRRLPCCGLGLGWLLFIAGFFLAAIPWYVGAFILICVRVHDYREK 99

Query: 100 PGYVACTXXXXXXXXXXPLGLTKGAHVW 127
           PGYVACT          PLGLTKGAHVW
Sbjct: 100 PGYVACTVAAVIAAIVIPLGLTKGAHVW 127



>Os01g0667100 Conserved hypothetical protein
          Length = 185

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 60/85 (70%)

Query: 43  GYGPIAEGRPVRMRRLPCCXXXXXXXXFIAGFFLAAIPWYVGAFILICVRVHDYREKPGY 102
           GY P+ EGRPVRMRRLP C        FI GFFLAAIPWY+GAF+LICVRVHDYREKPGY
Sbjct: 101 GYIPVVEGRPVRMRRLPFCGLGMGWFLFIIGFFLAAIPWYIGAFVLICVRVHDYREKPGY 160

Query: 103 VACTXXXXXXXXXXPLGLTKGAHVW 127
           VACT           LG+T+G  +W
Sbjct: 161 VACTIAASLAAIAILLGVTRGEEIW 185



>Os01g0242900 Conserved hypothetical protein
          Length = 156

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 57  RLPCCXXXXXXXXFIAGFFLAAIPWYVGAFILICVRVHDYREKPGYVACTXXXXXXXXXX 116
           RLPCC        FI GFFL AIPWYVGAF+L C RV DYREKPGYVAC           
Sbjct: 89  RLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLLWCSRV-DYREKPGYVACAIAAVLATIAI 147

Query: 117 PLGLTKGA 124
            +G T GA
Sbjct: 148 IIGATAGA 155



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.151    0.548 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,633,076
Number of extensions: 74055
Number of successful extensions: 158
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 4
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 150 (62.4 bits)