Os01g0242900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0242900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.69 | 0.303 | 11.3 | -1.45 | 0.108 | 1 | -0.311 | -3.52 | -0.0783 | 16.3 | 9.537 | 547 | -- | -- |
| 49.49 | 0.328 | 11.2 | -0.868 | 0.0887 | 0.935 | -0.962 | -- | 0.0813 | 18 | 5.558 | 516 | -- | -- |
| 41.79 | 0.301 | 11.3 | -1.47 | 0.0977 | 0.995 | -- | -3.76 | -0.0842 | 18 | 13.74 | 489 | -- | -- |
| 51.7 | 0.335 | 11.2 | -0.854 | 0.118 | 0.902 | -- | -- | 0.0835 | 16.7 | 4.241 | 585 | -- | -- |
| 42.15 | 0.302 | 11.3 | -1.49 | -- | 1.09 | -- | -3.74 | -0.0984 | -- | 13.7 | 480 | -- | -- |
| 59.79 | 0.362 | 11.2 | -0.647 | 0.336 | -- | -0.782 | -- | 0.223 | 18.3 | -- | -- | -- | -- |
| 61.29 | 0.367 | 11.2 | -0.637 | 0.333 | -- | -- | -- | 0.22 | 18.5 | -- | -- | -- | -- |
| 52.1 | 0.336 | 11.2 | -0.865 | -- | 0.989 | -- | -- | 0.071 | -- | 13.4 | 499 | -- | -- |
| 68.61 | 0.386 | 11.2 | -- | 0.204 | 0.515 | -- | -- | 0.227 | 18.1 | 13.83 | 499 | -- | -- |
| 67.05 | 0.383 | 11.2 | -0.646 | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
| 72 | 0.397 | 11.2 | -- | 0.341 | -- | -- | -- | 0.291 | 18.4 | -- | -- | -- | -- |
| 70.23 | 0.39 | 11.2 | -- | -- | 0.69 | -- | -- | 0.203 | -- | 11.25 | 451 | -- | -- |
| 78.05 | 0.412 | 11.2 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 16 | 41.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 22 | 41.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 22 |
| 43 | 42.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 64 | 42.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 73 | 42.16 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 79 | 42.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 93 | 42.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 130 | 42.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 132 | 42.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 139 | 42.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 155 | 42.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 195 | 42.77 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 214 | 42.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 222 | 42.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 232 | 42.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 238 | 42.91 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 282 | 43.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 334 | 43.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 345 | 43.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 401 | 43.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 403 | 43.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 414 | 43.42 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 418 | 43.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 419 | 43.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 421 | 43.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 422 | 43.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 425 | 43.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 436 | 43.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 438 | 43.46 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 465 | 43.52 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 531 | 43.67 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 622 | 43.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 13 |
| 682 | 43.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 711 | 44.01 | humidity | 70 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 735 | 44.04 | wind | 7 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 748 | 44.05 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 798 | 44.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 835 | 44.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 13 |
| 875 | 44.16 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 899 | 44.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 10 |
| 938 | 44.21 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 949 | 44.22 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 952 | 44.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 10 |