BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0242900 Os01g0242900|AK071658
(156 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17080.1 | chr1:5840458-5841536 REVERSE LENGTH=155 86 1e-17
AT1G53560.1 | chr1:19984908-19985960 REVERSE LENGTH=154 85 2e-17
AT1G29970.2 | chr1:10498458-10501311 REVERSE LENGTH=313 73 6e-14
AT3G14595.1 | chr3:4909037-4910226 FORWARD LENGTH=133 58 2e-09
>AT1G17080.1 | chr1:5840458-5841536 REVERSE LENGTH=155
Length = 154
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Query: 62 PYYRPRGGYQGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAF-LL 120
PYY GYQ +P A R RLPCCGIG+GWFLFIVGFFLGAIPWYVG F ++
Sbjct: 59 PYYA--HGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMM 116
Query: 121 WCSRVDYREKPGY 133
+ R+DYREKPGY
Sbjct: 117 FGRRIDYREKPGY 129
>AT1G53560.1 | chr1:19984908-19985960 REVERSE LENGTH=154
Length = 153
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 47/63 (74%), Gaps = 10/63 (15%)
Query: 71 QGIPARDYEAGARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLLWCSRVDYREK 130
QG PAR +RLPCCG+G+GWFLFI+GF LGAIPWYVG F+L C+R+D REK
Sbjct: 75 QGRPAR----------QNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREK 124
Query: 131 PGY 133
PGY
Sbjct: 125 PGY 127
>AT1G29970.2 | chr1:10498458-10501311 REVERSE LENGTH=313
Length = 312
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 37/45 (82%)
Query: 89 RLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLLWCSRVDYREKPGY 133
LPCCG+G+GWFLFI+GF G IPWY+GAF++ + VD+REK GY
Sbjct: 89 ELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 133
>AT3G14595.1 | chr3:4909037-4910226 FORWARD LENGTH=133
Length = 132
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 42/65 (64%), Gaps = 9/65 (13%)
Query: 74 PARDYEAG-----ARGHGHDRLPCCGIGIGWFLFIVGFFLGAIPWYVGAFLLWCSRVDYR 128
PA+ Y G R H R CCGIGIGW LFI+GFF A+PWY+G FLL SR + R
Sbjct: 46 PAQPYAQGYVVNGVRPTEHGR--CCGIGIGWVLFILGFFF-ALPWYIGFFLLLFSR-NPR 101
Query: 129 EKPGY 133
E+PGY
Sbjct: 102 ERPGY 106
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.155 0.579
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,948,567
Number of extensions: 75130
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)