Os01g0667100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0667100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.71 | 0.541 | 6.91 | 1.79 | 0.659 | 1.39 | 0.427 | 1.33 | -0.0241 | 11.2 | 25.8 | 170 | -- | -- |
| 135.04 | 0.541 | 6.88 | 2.01 | 0.653 | 1.3 | 0.218 | -- | 0.0291 | 11 | 25.94 | 190 | -- | -- |
| 133.35 | 0.538 | 6.91 | 1.83 | 0.651 | 1.37 | -- | 1.21 | -0.023 | 11 | 25.76 | 180 | -- | -- |
| 135.1 | 0.541 | 6.89 | 2.01 | 0.633 | 1.26 | -- | -- | 0.0189 | 11 | 25.94 | 190 | -- | -- |
| 150.71 | 0.572 | 6.93 | 1.82 | -- | 1.31 | -- | 1.1 | -0.0273 | -- | 26.33 | 493 | -- | -- |
| 158.35 | 0.59 | 6.95 | 1.69 | 0.582 | -- | -0.0356 | -- | -0.254 | 9.35 | -- | -- | -- | -- |
| 158.35 | 0.589 | 6.95 | 1.69 | 0.582 | -- | -- | -- | -0.254 | 9.36 | -- | -- | -- | -- |
| 152.41 | 0.575 | 6.9 | 2.02 | -- | 1.24 | -- | -- | 0.0258 | -- | 26.57 | 480 | -- | -- |
| 230.51 | 0.707 | 6.97 | -- | 0.598 | 0.429 | -- | -- | -0.364 | 9.67 | 25.71 | 161 | -- | -- |
| 178.18 | 0.624 | 6.96 | 1.69 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 233.64 | 0.715 | 6.99 | -- | 0.583 | -- | -- | -- | -0.442 | 9.14 | -- | -- | -- | -- |
| 248.76 | 0.735 | 6.99 | -- | -- | 0.454 | -- | -- | -0.368 | -- | 26.6 | 425 | -- | -- |
| 253.26 | 0.743 | 7.01 | -- | -- | -- | -- | -- | -0.439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 2 | 131.56 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 7 | 131.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 8 | 131.82 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 12 | 132.12 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 28 | 132.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 29 | 132.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 78 | 133.90 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 119 | 134.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 132 | 134.81 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 141 | 134.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 143 | 134.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 159 | 135.07 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 167 | 135.20 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 171 | 135.23 | temperature | 25 | 270 | < th | dose independent | sin | 10 | NA |
| 201 | 135.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 237 | 135.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 247 | 135.89 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 22 |
| 248 | 135.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 328 | 136.40 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 365 | 136.69 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 378 | 136.77 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 22 |
| 388 | 136.83 | temperature | 25 | 270 | < th | dose independent | rect. | 18 | 23 |
| 470 | 137.19 | temperature | 25 | 270 | > th | dose independent | sin | 11 | NA |
| 518 | 137.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 571 | 137.78 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 643 | 138.07 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 23 |
| 644 | 138.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 646 | 138.10 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 656 | 138.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 660 | 138.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 18 |
| 664 | 138.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 722 | 138.42 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 13 |
| 737 | 138.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 765 | 138.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 766 | 138.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 783 | 138.70 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 840 | 138.94 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 847 | 138.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 875 | 139.07 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 882 | 139.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 926 | 139.25 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 941 | 139.29 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 16 |
| 948 | 139.31 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 950 | 139.32 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 13 |
| 966 | 139.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 980 | 139.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 983 | 139.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 990 | 139.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |