BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0667100 Os01g0667100|Os01g0667100
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17080.1  | chr1:5840458-5841536 REVERSE LENGTH=155             66   8e-12
AT1G53560.1  | chr1:19984908-19985960 REVERSE LENGTH=154           65   3e-11

>AT1G17080.1 | chr1:5840458-5841536 REVERSE LENGTH=155
          Length = 154

 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 41/81 (50%)

Query: 105 VVEGRPVRMRRLPFCXXXXXXXXXXXXXXXXXXPWYIGAFVLICVRVHDYREKPGYVACT 164
           V EGRPVR RRLP C                  PWY+G F+++  R  DYREKPGY+ACT
Sbjct: 74  VAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYREKPGYIACT 133

Query: 165 XXXXXXXXXXXXGVTRGEEIW 185
                       GV++G + W
Sbjct: 134 IAAILATIAVILGVSKGADDW 154



>AT1G53560.1 | chr1:19984908-19985960 REVERSE LENGTH=154
          Length = 153

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 99  VQGYIPVVEGRPVRMRRLPFCXXXXXXXXXXXXXXXXXXPWYIGAFVLICVRVHDYREKP 158
           V GY PV +GRP R  RLP C                  PWY+G F+L+C R+ D REKP
Sbjct: 68  VAGY-PVSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARI-DPREKP 125

Query: 159 GYVACTXXXXXXXXXXXXGVTRGEEIW 185
           GYVACT            GV  G  +W
Sbjct: 126 GYVACTIAAVVATITIVFGVMGGRGVW 152



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.145    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,918,965
Number of extensions: 35735
Number of successful extensions: 28
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 3
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)