BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0667100 Os01g0667100|Os01g0667100
         (185 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0667100  Conserved hypothetical protein                      135   2e-32
Os05g0564800  Conserved hypothetical protein                       90   1e-18

>Os01g0667100 Conserved hypothetical protein
          Length = 185

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 84/185 (45%)

Query: 1   MAGEMPDADGKPRXXXXXXXXXXXXXXXXXXXXXXTFGAPSSAPGEXXXXXXXXXXXXXX 60
           MAGEMPDADGKPR                      TFGAPSSAPGE              
Sbjct: 1   MAGEMPDADGKPRSASSGFQPSAPPQPQAQQYQYGTFGAPSSAPGEVPQPAVGFPQPAPP 60

Query: 61  XXLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQGYIPVVEGRPVRMRRLPFCX 120
             LRH                                 VQGYIPVVEGRPVRMRRLPFC 
Sbjct: 61  PGLRHYPQPPPPSYAVYPPLPPQTYPAAAPYYALGYQAVQGYIPVVEGRPVRMRRLPFCG 120

Query: 121 XXXXXXXXXXXXXXXXXPWYIGAFVLICVRVHDYREKPGYVACTXXXXXXXXXXXXGVTR 180
                            PWYIGAFVLICVRVHDYREKPGYVACT            GVTR
Sbjct: 121 LGMGWFLFIIGFFLAAIPWYIGAFVLICVRVHDYREKPGYVACTIAASLAAIAILLGVTR 180

Query: 181 GEEIW 185
           GEEIW
Sbjct: 181 GEEIW 185



>Os05g0564800 Conserved hypothetical protein
          Length = 127

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 50/85 (58%)

Query: 101 GYIPVVEGRPVRMRRLPFCXXXXXXXXXXXXXXXXXXPWYIGAFVLICVRVHDYREKPGY 160
           GY P+ EGRPVRMRRLP C                  PWY+GAF+LICVRVHDYREKPGY
Sbjct: 43  GYGPIAEGRPVRMRRLPCCGLGLGWLLFIAGFFLAAIPWYVGAFILICVRVHDYREKPGY 102

Query: 161 VACTXXXXXXXXXXXXGVTRGEEIW 185
           VACT            G+T+G  +W
Sbjct: 103 VACTVAAVIAAIVIPLGLTKGAHVW 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.145    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,278,038
Number of extensions: 64187
Number of successful extensions: 49
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)