BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0228300 Os01g0228300|AK061358
(222 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0228300 Mpv17/PMP22 family protein 457 e-129
Os08g0566900 Mpv17/PMP22 family protein 80 8e-16
Os02g0226000 Similar to Peroxisomal membrane protein PMP22 ... 77 1e-14
Os12g0508100 Similar to Acrosin precursor (EC 3.4.21.10) (5... 73 1e-13
Os01g0730800 Mpv17/PMP22 family protein 65 3e-11
>Os01g0228300 Mpv17/PMP22 family protein
Length = 222
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MRRLWRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPED 60
MRRLWRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPED
Sbjct: 1 MRRLWRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPED 60
Query: 61 KDKEFKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLL 120
KDKEFKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLL
Sbjct: 61 KDKEFKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLL 120
Query: 121 FGPVDLLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQL 180
FGPVDLLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQL
Sbjct: 121 FGPVDLLLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQL 180
Query: 181 LYVNLFCLLDSCFLSWIDQQGDAPWKQWFTSFQKIEGQKGKV 222
LYVNLFCLLDSCFLSWIDQQGDAPWKQWFTSFQKIEGQKGKV
Sbjct: 181 LYVNLFCLLDSCFLSWIDQQGDAPWKQWFTSFQKIEGQKGKV 222
>Os08g0566900 Mpv17/PMP22 family protein
Length = 187
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 27/176 (15%)
Query: 8 YQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKEFKI 67
Y + L HP+RT+ ++SG+L G D AQ ++ G P +
Sbjct: 12 YMRQLQAHPLRTKAITSGVLAGCSDAIAQKIS-----GVPN------------------L 48
Query: 68 DWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDLL 127
+R+ + +GFA+ GP GH+ ++ +DRF + +T A KV + L P + +
Sbjct: 49 QRRRLLLIMLYGFAYAGPFGHFLHKLMDRFFKGKKGKET---TAKKVLVEQLTASPWNNM 105
Query: 128 LFFSYVGLA-SGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLY 182
+F Y GL GR QVK +K+D+ + WP V N+ ++P++ ++L+
Sbjct: 106 MFMMYYGLVVEGRPFSQVKSKLKKDYASVQLTAWKFWPIVSWINYEYMPLQLRVLF 161
>Os02g0226000 Similar to Peroxisomal membrane protein PMP22 (22 kDa peroxisomal
membrane protein)
Length = 205
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 27/182 (14%)
Query: 2 RRLWRWYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDK 61
RR WR Y + L HP+RT+++++G L G+ D AQ ++ Y
Sbjct: 26 RRAWRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQ------------------- 66
Query: 62 DKEFKIDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLF 121
+I+ +R+ + FGFA+ GP GH+ ++ LD + KT +A KV + +
Sbjct: 67 ----RIEKRRLLLKMLFGFAYGGPFGHFLHKVLDYIFKGKKDTKT---IAKKVLLEQITS 119
Query: 122 GPVDLLLFFSYVG-LASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQL 180
P + LLF Y G + R ++VK VK+ + + WP V N ++P+++++
Sbjct: 120 SPWNNLLFLFYYGYVVERRPFKEVKTRVKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRV 179
Query: 181 LY 182
++
Sbjct: 180 IF 181
>Os12g0508100 Similar to Acrosin precursor (EC 3.4.21.10) (53 kDa fucose-binding
protein)
Length = 240
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 7 WYQQCLATHPVRTQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDKDKEFK 66
WY + PV T+ V++ ++ + D+ +Q +T PED
Sbjct: 90 WYLGSIEARPVLTKSVTAAAIFTVADLSSQMITLG----------------PEDS----- 128
Query: 67 IDWKRVGITSSFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDL 126
+D R +S+G GP H W+ ++ + + ++ TFK K+ ++GP+
Sbjct: 129 LDLVRTLRMASYGLLISGPSLHIWFNFVSKLLPKQDVMNTFK----KMFLGQAVYGPIIN 184
Query: 127 LLFFSYVGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQ 179
+FFSY G ++ ++ +KRD IP + G WP F+FIPV Q
Sbjct: 185 SVFFSYNAGLQGETIPEIMARLKRDLIPTIKSGLIYWPLCDFITFKFIPVHLQ 237
>Os01g0730800 Mpv17/PMP22 family protein
Length = 239
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 19 TQVVSSGILWGLGDIGAQAVTHYSAPGRPRHHQHHAKNPPEDK-----DKEFKIDWKRVG 73
TQ V++ L GD AQ R R + P D D DW R
Sbjct: 66 TQAVTAASLTLTGDTIAQV--------RQRIVDRRLRGPEPDSKGLVPDLLMSHDWLRAL 117
Query: 74 ITSSFGFAFVGPVGHYWYEYLDRFILRRYQPK-TFKFVASKVAADGLLFGPVDLLLFFSY 132
+S+GF GP H WY++LD+ + PK TF +++KV + + GP + + F++
Sbjct: 118 RMASYGFLLYGPGSHAWYQFLDQCM-----PKPTFANLSTKVILNQIALGPCVIGVIFAW 172
Query: 133 VGLASGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNLFCLLDSC 192
L G+ + ++ + D +P L+ G W V I NF +P+ ++ + + SC
Sbjct: 173 NNLWIGK-LSELPSKYRNDALPTLLFGFRFWIPVSIINFWMVPLSARVAF------MSSC 225
Query: 193 FLSW 196
+ W
Sbjct: 226 AIFW 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.142 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,427,960
Number of extensions: 350658
Number of successful extensions: 1280
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1275
Number of HSP's successfully gapped: 6
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)