Os02g0226000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein).
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Os02g0226000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.34 | 0.259 | 11.6 | -0.68 | 0.883 | -0.676 | -0.527 | -1.03 | -0.115 | 11.1 | 20.5 | 1317 | -- | -- |
| 32.19 | 0.264 | 11.6 | -0.521 | 0.848 | -0.485 | -0.413 | -- | -0.0783 | 11.1 | 20.91 | 1089 | -- | -- |
| 31.47 | 0.261 | 11.6 | -0.688 | 0.896 | -0.684 | -- | -1.02 | -0.11 | 11.1 | 20.5 | 1392 | -- | -- |
| 32.88 | 0.267 | 11.6 | -0.525 | 0.858 | -0.497 | -- | -- | -0.0736 | 11.1 | 20.91 | 1087 | -- | -- |
| 73.59 | 0.4 | 11.6 | -0.697 | -- | -0.672 | -- | -0.594 | -0.0461 | -- | 21.88 | 862 | -- | -- |
| 39.15 | 0.293 | 11.6 | -0.719 | 0.91 | -- | -0.458 | -- | -0.199 | 11.2 | -- | -- | -- | -- |
| 40.04 | 0.296 | 11.6 | -0.737 | 0.913 | -- | -- | -- | -0.201 | 11.2 | -- | -- | -- | -- |
| 74.63 | 0.402 | 11.6 | -0.572 | -- | -0.692 | -- | -- | -0.0515 | -- | 21.37 | 882 | -- | -- |
| 38.32 | 0.288 | 11.5 | -- | 0.886 | -0.675 | -- | -- | 0.0575 | 11 | 21.1 | 3852 | -- | -- |
| 92.05 | 0.448 | 11.6 | -0.759 | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
| 54.38 | 0.345 | 11.6 | -- | 0.92 | -- | -- | -- | -0.119 | 11.2 | -- | -- | -- | -- |
| 80.11 | 0.417 | 11.6 | -- | -- | -0.883 | -- | -- | 0.0569 | -- | 20.8 | 886 | -- | -- |
| 107.25 | 0.483 | 11.6 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 3 | 29.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 5 | 30.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 18 | 30.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 20 | 30.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 41 | 30.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 56 | 30.18 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 85 | 30.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 86 | 30.27 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 236 | 30.58 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 415 | 30.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 465 | 30.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 487 | 30.87 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 497 | 30.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 542 | 30.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 557 | 30.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 581 | 30.95 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 605 | 30.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 624 | 30.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 628 | 30.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 665 | 31.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 720 | 31.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 758 | 31.11 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 785 | 31.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 818 | 31.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 831 | 31.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |