BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0226000 Os02g0226000|AK121976
(205 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14305.1 | chr4:8235335-8236605 REVERSE LENGTH=186 244 2e-65
AT4G04470.1 | chr4:2227963-2229226 REVERSE LENGTH=191 211 3e-55
AT3G24570.1 | chr3:8966675-8968530 REVERSE LENGTH=236 60 6e-10
AT5G43140.1 | chr5:17321570-17323224 FORWARD LENGTH=255 58 4e-09
AT1G52870.2 | chr1:19685856-19687678 FORWARD LENGTH=367 53 1e-07
AT5G19750.1 | chr5:6677124-6679127 FORWARD LENGTH=289 50 8e-07
AT4G03410.2 | chr4:1501907-1503503 FORWARD LENGTH=362 49 2e-06
>AT4G14305.1 | chr4:8235335-8236605 REVERSE LENGTH=186
Length = 185
Score = 244 bits (623), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/177 (64%), Positives = 139/177 (78%)
Query: 29 WRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQRIEKRRLLLKMLFGFAYGGPFG 88
WR+YL QLQ HPLRTK ITAG LAG SD++AQK+SG +RI+ RRLLL ML+GFAYGGPFG
Sbjct: 9 WRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYGFAYGGPFG 68
Query: 89 HFLHKVLDYIFXXXXXXXXXXXXVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRVK 148
HF HK++D IF VLLEQ+TSSPWNN LF+ YYG VVE RP+K VK ++
Sbjct: 69 HFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPWKLVKHKLG 128
Query: 149 KQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRARAMSLKQS 205
K YP++QL+AW FWPIVGW+N+ Y+PLQFRV+F SFVA CW IFLNL+AR+ +K +
Sbjct: 129 KDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSPVIKNA 185
>AT4G04470.1 | chr4:2227963-2229226 REVERSE LENGTH=191
Length = 190
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 127/173 (73%)
Query: 30 RQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQRIEKRRLLLKMLFGFAYGGPFGH 89
++YL QLQ HPLRTK ITAG L+GVSD V+QKLSG Q+I+ RR+LLK++F + GP GH
Sbjct: 12 QRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGH 71
Query: 90 FLHKVLDYIFXXXXXXXXXXXXVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRVKK 149
F H LD F V+LEQ+T SP N+LLF+ YYG V+ER P+ V+ R+KK
Sbjct: 72 FFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKK 131
Query: 150 QYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRARAMSL 202
YP+VQL+AW F+P+VGWIN+ Y+PL FRVI HS VA WGIFL LRAR+M+L
Sbjct: 132 TYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184
>AT3G24570.1 | chr3:8966675-8968530 REVERSE LENGTH=236
Length = 235
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 43/205 (20%)
Query: 29 WRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQRIEKRRLL-------------- 74
WR Y R L +HP++T++I++G L G D AQ ++ KRRLL
Sbjct: 5 WRWYQRCLTVHPVKTQVISSGFLWGFGDVTAQYIT--HSTAKRRLLRLTETNKDADADAE 62
Query: 75 -------------------LKMLFGFAYGGPFGHFLHKVLDYIFXXX-----XXXXXXXX 110
+ +FGF + GP GHF ++ LD
Sbjct: 63 IKVKWKQDAEFKVNWKRVAITSMFGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVAA 122
Query: 111 XVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRVKKQY-PSVQLSAWMFWPIVGWIN 169
V ++ + P + L+F Y G+ + EVK +K+ + P++ L WP++ N
Sbjct: 123 KVAMDGLIFGPVDLLVFFTYMGFATGKNT-AEVKEGLKRDFLPALALEGGA-WPLLQIAN 180
Query: 170 HMYMPLQFRVIFHSFVACCWGIFLN 194
Y+P+Q+++++ + FL+
Sbjct: 181 FRYVPVQYQLLYVNIFCLVDSAFLS 205
>AT5G43140.1 | chr5:17321570-17323224 FORWARD LENGTH=255
Length = 254
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Query: 30 RQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLS-----GYQRIEKRRLLLKMLFGFAYG 84
R YLR+L+ HP TK IT + +D +Q ++ + I R+ FG +
Sbjct: 80 RWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARM---ASFGLIFL 136
Query: 85 GPFGHFLHKVLDYIFXXXXXXXXXXXXVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVK 144
GP H L I +++ Q+ P +N +F + Y ++ +E+
Sbjct: 137 GPSQHLWFSYLSKILPKRDVLTTFKK-IMMGQVLFGPVSNTVF-YSYNAALQGENSEEIV 194
Query: 145 TRVKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRAR 198
R+K+ + M+WP+ ++ Y+P+ + + +S A W I+L A
Sbjct: 195 ARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLTYMAN 248
>AT1G52870.2 | chr1:19685856-19687678 FORWARD LENGTH=367
Length = 366
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 4/175 (2%)
Query: 29 WRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQ--RIEKRRLLLKMLFGFAYGGP 86
W Y L+ +P+ KM+ +G + V D +AQ G I++ R L L GF G
Sbjct: 170 WIAYEEALKQNPVLAKMVISGVVYSVGDWIAQCYEGKPLFEIDRARTLRSGLVGFTLHGS 229
Query: 87 FGHFLHKVLDYIFXXXXXXXXXXXXVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTR 146
HF ++ + +F + + S+ WN++ F G++ P K
Sbjct: 230 LSHFYYQFCEELFPFQDWWVVPVKVAFDQTVWSAIWNSIYFTV-LGFLRFESPISIFK-E 287
Query: 147 VKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRARAMS 201
+K + + + W WP I + +P++ R+++ V W L+ + S
Sbjct: 288 LKATFLPMLTAGWKLWPFAHLITYGLVPVEQRLLWVDCVELIWVTILSTYSNEKS 342
>AT5G19750.1 | chr5:6677124-6679127 FORWARD LENGTH=289
Length = 288
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Query: 29 WRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQ-KLSGYQRIEKRRLLLKMLFGFAYGGPF 87
W Q L L P+ TK +TA L V D + Q ++ ++K+R L G GP
Sbjct: 117 WYQAL--LSNSPVLTKAVTAALLNLVGDLICQLTINKTSSLDKKRTLTFTFLGLGLVGPT 174
Query: 88 GHFLHKVLDYIFXXXXXXXXXXXXVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTRV 147
HF + L + +LL+Q +P +FL +E +P V ++
Sbjct: 175 LHFWYLYLSKVVTASGLSGAVIR-LLLDQFVFAPIFVGVFLSAV-VTLEGKP-SNVIPKL 231
Query: 148 KKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRA 197
++++ ++ W W ++N ++P ++V+ + VA W + L+ +A
Sbjct: 232 QQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKA 281
>AT4G03410.2 | chr4:1501907-1503503 FORWARD LENGTH=362
Length = 361
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 80/183 (43%), Gaps = 8/183 (4%)
Query: 29 WRQYLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQ--RIEKRRLLLKMLFGFAYGGP 86
W Y + L+ +P+ KM +G + + D +AQ G ++ R+L L GF G
Sbjct: 128 WFAYEQILKTNPVLAKMAISGIVYSLGDWIAQCYEGKPLFEFDRTRVLRSGLVGFTLHGS 187
Query: 87 FGHFLHKVLDYIFXXXXXXXXXXXXVLLEQITSSPWNNLLFLFYYGYVVERRPFKEVKTR 146
H+ ++ + +F + + S+ WN++ F G + + P ++ +
Sbjct: 188 LSHYYYQFCEALFPFQEWWVVPAKVAFDQTVWSAIWNSIYFTVL-GLLRFQSP-ADIFSE 245
Query: 147 VKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFL----NLRARAMSL 202
+K + + + W WP+ + + +P+ R+++ + W L N +A A +
Sbjct: 246 IKTTFLPMLTAGWKLWPLAHLVTYGVIPVDQRLLWVDCIELIWVTILSTYSNEKAEAQAS 305
Query: 203 KQS 205
+++
Sbjct: 306 EET 308
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.332 0.143 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,470,350
Number of extensions: 123944
Number of successful extensions: 293
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 109 (46.6 bits)