Os01g0228300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mpv17/PMP22 family protein.
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Os01g0228300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mpv17/PMP22 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.48 | 0.268 | 11.1 | -1 | 1.55 | 1.19 | 0.475 | 0.257 | -0.262 | 4.8 | 9.82 | 11 | -- | -- |
| 32.52 | 0.266 | 11.1 | -1.04 | 1.55 | 1.19 | 0.417 | -- | -0.271 | 4.81 | 11.31 | 12 | -- | -- |
| 32.96 | 0.267 | 11.1 | -1.05 | 1.54 | 1.16 | -- | -0.079 | -0.276 | 4.83 | 11.13 | 12 | -- | -- |
| 32.96 | 0.267 | 11.1 | -1.03 | 1.54 | 1.16 | -- | -- | -0.269 | 4.84 | 11.69 | 12 | -- | -- |
| 132.54 | 0.539 | 11.1 | -0.804 | -- | -0.161 | -- | -0.528 | -0.0701 | -- | 11.13 | 12 | -- | -- |
| 45.7 | 0.317 | 11.1 | -0.806 | 1.3 | -- | 0.0931 | -- | -0.104 | 5.43 | -- | -- | -- | -- |
| 45.72 | 0.317 | 11.1 | -0.806 | 1.3 | -- | -- | -- | -0.105 | 5.43 | -- | -- | -- | -- |
| 128.48 | 0.528 | 11.1 | -0.648 | -- | -0.561 | -- | -- | 0.00294 | -- | -16.36 | 281 | -- | -- |
| 57.39 | 0.355 | 11.1 | -- | 1.44 | 0.576 | -- | -- | -0.0993 | 5.05 | 20.6 | 27 | -- | -- |
| 133.2 | 0.539 | 11.1 | -0.763 | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
| 62.85 | 0.371 | 11.1 | -- | 1.28 | -- | -- | -- | -0.0149 | 5.46 | -- | -- | -- | -- |
| 129.56 | 0.53 | 11.1 | -- | -- | -0.824 | -- | -- | 0.0625 | -- | 24.83 | 326 | -- | -- |
| 148.54 | 0.569 | 11.1 | -- | -- | -- | -- | -- | 0.0118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 7 | 31.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 10 | 31.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 12 | 31.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 14 | 31.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 16 | 31.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 64 | 31.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 74 | 31.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 79 | 31.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 89 | 31.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 102 | 32.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 104 | 32.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 106 | 32.09 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 108 | 32.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 112 | 32.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 131 | 32.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 132 | 32.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 151 | 32.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 166 | 32.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 221 | 32.48 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 252 | 32.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 255 | 32.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 272 | 32.60 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 294 | 32.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 319 | 32.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 338 | 32.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 362 | 32.77 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 382 | 32.80 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 405 | 32.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 454 | 32.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 460 | 32.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 472 | 32.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 488 | 32.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 493 | 32.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 499 | 32.97 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 523 | 33.00 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 567 | 33.05 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 588 | 33.07 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 629 | 33.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 641 | 33.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 661 | 33.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 662 | 33.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 675 | 33.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 706 | 33.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 797 | 33.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 810 | 33.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 842 | 33.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 843 | 33.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 844 | 33.31 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 890 | 33.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 940 | 33.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 950 | 33.38 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 965 | 33.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |